DN617535

Overview
NameDN617535
Unique NameDN617535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.008e-30
Identity = 70/146 (47.95%), Postives = 88/146 (60.27%), Query Frame = 1
Query:  160 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            +  +A  K  Y  K+ QLL +Y +  +  ADNVGS Q+Q IR  LRG ++VLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TK
Sbjct:    3 REDRATWKSNYFLKIIQLLNDYPKCFIVGADNVGSKQMQTIRLSLRGKAIVLMGKNTMMRKAIRGHLE--NNPALEKLLPHIRGNVGFVFTKEDLPEVRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTK 146          
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_DANRE (60S acidic ribosomal protein P0 OS=Danio rerio GN=rplp0 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.846e-30
Identity = 70/146 (47.95%), Postives = 89/146 (60.96%), Query Frame = 1
Query:  160 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            +  +A  K  Y  K+ QLL+++ +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TK
Sbjct:    3 REDRATWKSNYFLKIIQLLDDFPKCFIVGADNVGSKQMQTIRLSLRGKAVVLMGKNTMMRKAIRGHLE--NNPALERLLPHIRGNVGFVFTKEDLTEVRDLLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTK 146          
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0L_HUMAN (60S acidic ribosomal protein P0-like OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.025e-29
Identity = 71/146 (48.63%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  160 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG  VVLMGKNTMM++ IR H E   N A   L+P + GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TK
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKVVVLMGKNTMMRKAIRGHLE--NNPALEKLLPHIWGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTK 146          
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_PLAF8 (60S acidic ribosomal protein P0 OS=Plasmodium falciparum (isolate 7G8) GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.253e-27
Identity = 62/149 (41.61%), Postives = 94/149 (63.09%), Query Frame = 1
Query:  154 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGA-PARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            + K SK +KK  Y  KL  L+++Y++IL+   DNVGSNQ+ ++R+ LRG + +LMGKNT ++  ++ + +         L+PL++ N+G +F K DL             + PAR+G++APIDV +PPG TG+DPS TSF + L I TK
Sbjct:    1 MAKLSKQQKKQMYIEKLSSLIQQYSKILIVHVDNVGSNQMASVRKSLRGKATILMGKNTRIRTALKKNLQAVPQIE--KLLPLVKLNMGFVFCKDDLSEIRNIILDNKSSSHPARLGVIAPIDVFIPPGPTGMDPSHTSFLESLGISTK 147          
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_YEAST (60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae GN=RPP0 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.385e-26
Identity = 65/141 (46.10%), Postives = 83/141 (58.87%), Query Frame = 1
Query:  175 EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            EKK  Y AKL + LEEY  + V   DNV S Q+  +R+ LRG +VVLMGKNTM++R IR       +  F  L+P ++G VG +FT   L             APAR G VAP D+ V   NTG++P +TSFFQ L +PTK
Sbjct:    6 EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPD--FEKLLPFVKGYVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTK 144          
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_SCHPO (60S acidic ribosomal protein P0 OS=Schizosaccharomyces pombe GN=rpp0 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.809e-26
Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1
Query:  163 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            A   E K  Y  KL  L E+Y  + V   DNV S Q+  +R+ LRG + ++MGKNTM++R +R             L+P+++GNVG +FT  DL             APAR   +AP+DV VP GNTG++P +TSFFQ L IPTK
Sbjct:    2 AISKESKAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELE--RLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTK 144          
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_EIMTE (60S acidic ribosomal protein P0 OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.872e-23
Identity = 60/142 (42.25%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  172 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            A K+  Y  +L QL+ E+ ++LV +AD+VGS QL  IR  LRG + VLMGKNT ++  +R   ++        L+PL++ NVG IF + D              APA+ G+ AP DV +P G TG+DP  T FFQ L I TK
Sbjct:    6 AAKRREYFPRLLQLVLEHPRVLVVSADHVGSKQLAGIRVALRGQATVLMGKNTKIRTALRQQLQQ--QPQLQALLPLVRLNVGFIFCRADPAAVRAVVQQHKVPAPAKQGVTAPTDVFIPAGPTGMDPGSTGFFQALGISTK 145          
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_TRYCR (60S acidic ribosomal protein P0 OS=Trypanosoma cruzi PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.445e-23
Identity = 61/151 (40.40%), Postives = 84/151 (55.63%), Query Frame = 1
Query:  166 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLI-------PLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            S +E K  Y+ +    L +Y ++L    DNV S Q+ ++RR LRG   ++MGK T+ K+ +   AE    +A+  L+        LL GN  LIFT  ++             APARVG +AP DV+VP GNTG++P  TSFFQ LNI TK
Sbjct:    3 SVSEAKREYEERFNGCLTKYGRVLFCLMDNVRSQQVHDVRRDLRGLGELVMGKKTLQKKIVERRAEDKKASAYDKLLYNTCIEKKLLCGNTALIFTNEEIPVITAVLDKHRVQAPARVGAIAPCDVIVPAGNTGMEPKATSFFQALNIATK 153          
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_DICDI (60S acidic ribosomal protein P0 OS=Dictyostelium discoideum GN=rplp0 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 7.864e-22
Identity = 58/142 (40.85%), Postives = 84/142 (59.15%), Query Frame = 1
Query:  172 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            +++K  +  K  +L   Y +++VA AD VGS+QLQ IR+ +RG   VLMGK TM+++ IR  A+       LN    L+ N  +IF K ++            GAPA+ G+ AP DV++P G TG++P+QTSF Q L I TK
Sbjct:    6 SKRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGKKTMIRKVIRDLADSKPELDALNTY--LKQNTCIIFCKDNIAEVKRVINTQRVGAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATK 145          
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_LEICH (60S acidic ribosomal protein P0 OS=Leishmania chagasi GN=LCP0 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.304e-20
Identity = 57/146 (39.04%), Postives = 78/146 (53.42%), Query Frame = 1
Query:  181 KIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP-------LLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            K  Y+ +L   L +Y+ +L    DNV S Q+ ++RRG RG +  +MGK T+  + +   A+    +              LL GN GLIFT   +             APARVG + P DVVVP G+TG++P+QTSFFQ LNI TK
Sbjct:    8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRGCRGKAEFIMGKKTLQAKIVEKRAQAKDASPEAKPFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDGHRVKAPARVGAI-PCDVVVPAGSTGMEPTQTSFFQALNIATK 152          
The following BLAST results are available for this feature:
BLAST of DN617535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RLA0_ICTPU6.008e-3047.9560S acidic ribosomal protein P0 OS=Ictalurus punct... [more]
RLA0_DANRE7.846e-3047.9560S acidic ribosomal protein P0 OS=Danio rerio GN=... [more]
RLA0L_HUMAN1.025e-2948.6360S acidic ribosomal protein P0-like OS=Homo sapie... [more]
RLA0_PLAF81.253e-2741.6160S acidic ribosomal protein P0 OS=Plasmodium falc... [more]
RLA0_YEAST1.385e-2646.1060S acidic ribosomal protein P0 OS=Saccharomyces c... [more]
RLA0_SCHPO1.809e-2642.7660S acidic ribosomal protein P0 OS=Schizosaccharom... [more]
RLA0_EIMTE1.872e-2342.2560S acidic ribosomal protein P0 OS=Eimeria tenella... [more]
RLA0_TRYCR2.445e-2340.4060S acidic ribosomal protein P0 OS=Trypanosoma cru... [more]
RLA0_DICDI7.864e-2240.8560S acidic ribosomal protein P0 OS=Dictyostelium d... [more]
RLA0_LEICH3.304e-2039.0460S acidic ribosomal protein P0 OS=Leishmania chag... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F12_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617535 ID=DN617535; Name=DN617535; organism=Citrus sinensis; type=EST; length=599bp
TTCTTTCACTCTCTTTGTATCTCGTTGAGGTTAAAGAGACGGCAACTCCG
CTGCTGTCCGCCTTGGCAAGCCGCTGCTTCGTCTTGGCCCTCGATTTTGT
ATAAATTTACAACTTTTTACCACCAACAAAAGTAGAACCAAATCCACGAA
ATGGTAGTGAAAGCATCGAAGGCCGAGAAGAAGATCGCGTACGACGCGAA
GCTATGCCAGTTGCTGGAAGAGTACACCCAAATCTTGGTGGCGGCCGCCG
ACAACGTGGGGTCCAATCAACTCCAGAACATTCGTAGGGGTCTGCGTGGA
GACTCCGTTGTGCTAATGGGAAAGAACACTATGATGAAGAGGACTATCAG
AATGCACGCTGAGAAGACCGGTAACACTGCCTTTCTCAATCTCATCCCCC
TCCTTCAGGGCAATGTTGGGTTGATTTTCACAAAGGGTGATTTGAAGGAA
GTGAAAGAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGG
TTTGGTTGCTCCAATTGATGTGGTTGTTCCTCCCGGCAACACAGGTCTCG
ACCCCTCCCAGACCTCCTTCTTCCAGGTGCTTAACATTCCCACCAAGAT
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