DN617530
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_PYRAE (50S ribosomal protein L4P OS=Pyrobaculum aerophilum GN=rpl4p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.314e-16 Identity = 50/148 (33.78%), Postives = 73/148 (49.32%), Query Frame = 3 Query: 156 IRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599 IRPD++ + + QP V AG + S ES+G G ++RIPR G R G F RGGR P K+ ++ H +IN +K+ S V ARGH +E VP +P+VV AE + + A K+ + +G + D Sbjct: 52 IRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRYKGSLWPR---GCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLAIRSAIAATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINRAKEAKKLFEALGLWPD 196
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_METBU (50S ribosomal protein L4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl4p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.314e-16 Identity = 55/168 (32.74%), Postives = 75/168 (44.64%), Query Frame = 3 Query: 99 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGG-THRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599 D++ ++ + LP+V RPD++ + N QPY AG QTSA SWG+GR V+++PR+ G R Q GGR P K KIN +KR LV ARGHK E+P V D+ E + K + L+ G Y D Sbjct: 8 DLSGNSKGEIALPEVFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSAHSWGSGRGVAQVPRISNGSRVARIPQAV------GGRRAHPPKTETDRTEKINKKEKRLAVRSAIAATIDADLVKARGHKF--TAEVPFVADDAIEGLVKIKEVISFLQAAGLYDD 167
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_METMA (50S ribosomal protein L4P OS=Methanosarcina mazei GN=rpl4p PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.242e-16 Identity = 53/167 (31.74%), Postives = 77/167 (46.11%), Query Frame = 3 Query: 99 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599 D+ + LP V A RPD++ N QPY S AG +TSA WG+GR VS +PR+ + + A +GGR P K K+N ++RY P+LV RGH E E+P+V + E++E+T ++ L+ G Y D Sbjct: 8 DLTGRTVGEIELPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSATGWGSGRGVSHVPRL-----KNSSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATIDPTLVNLRGHIFEA--ELPIVAVNDLENLERTKQVIEFLEAAGLYED 167
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_METMP (50S ribosomal protein L4P OS=Methanococcus maripaludis GN=rpl4p PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.823e-16 Identity = 59/175 (33.71%), Postives = 82/175 (46.86%), Query Frame = 3 Query: 75 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599 + V +L+G D + LP V +A RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN +K P +V ARGHKIE VP +PLVV+ ES+ KT L+V K + AD Sbjct: 3 VKVYNLDGSEKGD----IELPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLVKTKEVLEVFKTLKLDAD 167
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_HALSA (50S ribosomal protein L4P OS=Halobacterium salinarium GN=rpl4p PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 6.522e-16 Identity = 56/175 (32.00%), Postives = 82/175 (46.86%), Query Frame = 3 Query: 75 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599 +TV+ L+GD A T+ LP V + +RPD+V N Q Y AG +T+AES G+GR ++ +P+ GQGA GGR P K + +N +++ LV RGH + E PLVVSD E + KT + +L+ +G +AD Sbjct: 3 VTVRDLDGDDA----GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKA-------NGQGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKTQDVVSLLEALGVHAD 166
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_HALS3 (50S ribosomal protein L4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl4p PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 6.522e-16 Identity = 56/175 (32.00%), Postives = 82/175 (46.86%), Query Frame = 3 Query: 75 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599 +TV+ L+GD A T+ LP V + +RPD+V N Q Y AG +T+AES G+GR ++ +P+ GQGA GGR P K + +N +++ LV RGH + E PLVVSD E + KT + +L+ +G +AD Sbjct: 3 VTVRDLDGDDA----GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKA-------NGQGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKTQDVVSLLEALGVHAD 166
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_METM7 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl4p PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 8.518e-16 Identity = 58/175 (33.14%), Postives = 81/175 (46.29%), Query Frame = 3 Query: 75 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599 + V +L+G D + LP V + RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN +K P +V ARGHKIE VP +PLVV+ ES+ KT L+V K + AD Sbjct: 3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNADFESLAKTKEVLEVFKTLKLDAD 167
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_METM5 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl4p PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.898e-15 Identity = 57/175 (32.57%), Postives = 79/175 (45.14%), Query Frame = 3 Query: 75 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599 + V +L+G D + LP V + RPD++ + QP AG++TSA+S G G +R+ R G GAF GGR P K+ + +IN +K P +V ARGHKIE VP +PLVV+ E + KT L V K + AD Sbjct: 3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINKKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNAEFEGLVKTKEVLDVFKALNLAAD 167
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_HALLT (50S ribosomal protein L4P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl4p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 7.211e-15 Identity = 58/174 (33.33%), Postives = 82/174 (47.13%), Query Frame = 3 Query: 78 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599 TV L+G DA S V LP + + + RPD++G S N +Q Y AG +T AES+G+GR ++ IPR R A GR P K + + +N +++ V RGH + ++PLVVSD E + KT AL VL+ +GA AD Sbjct: 4 TVHDLDGG---DAGS-VELPAIFETAFRPDLIGRAVSAAQANRKQAYGADEFAGLRTPAESFGSGRGLAHIPR--SENVARRVPNAV-----SGRAAHPPKAEKDQTKSLNDKERQLAIRSAIAATADAETVAERGHAFDEDLDLPLVVSDEFEDLNKTQEALGVLEAVGADAD 166
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_ARCFU (50S ribosomal protein L4P OS=Archaeoglobus fulgidus GN=rpl4p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 7.211e-15 Identity = 55/173 (31.79%), Postives = 79/173 (45.66%), Query Frame = 3 Query: 81 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599 V +L+G++ + + LP+V RPDI+ + + RQPY + +G S E+WG G +R+PR G + GGR P K R+W KIN + R LV R H E E+P VVS+ ESV++T +V + IG YAD Sbjct: 5 VLNLKGEVTEE----IELPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPGHGYARVPRWKLG-----RRAVVVPQAVGGRRAHPPKPERKWAEKINKKEMRKALKSAIAATANEELVRQRSHVFE--GELPKVVSNELESVKRTKDVAEVFRAIGVYAD 166 The following BLAST results are available for this feature:
BLAST of DN617530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617530 ID=DN617530; Name=DN617530; organism=Citrus sinensis; type=EST; length=602bpback to top |