DN617530

Overview
NameDN617530
Unique NameDN617530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_PYRAE (50S ribosomal protein L4P OS=Pyrobaculum aerophilum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.314e-16
Identity = 50/148 (33.78%), Postives = 73/148 (49.32%), Query Frame = 3
Query:  156 IRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            IRPD++   + +      QP  V   AG + S ES+G G  ++RIPR  G    R   G F    RGGR   P K+ ++ H +IN  +K+             S V ARGH +E VP +P+VV   AE + +   A K+ + +G + D
Sbjct:   52 IRPDLIRRAYLSALSARFQPKGVYEGAGKEHSCESFGVGLGIARIPRYKGSLWPR---GCFAPNTRGGRRAHPPKVEKKLHEEINKKEKKLAIRSAIAATAYRSWVAARGHVVEKVPSLPVVVVGDAEKINRAKEAKKLFEALGLWPD 196          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_METBU (50S ribosomal protein L4P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.314e-16
Identity = 55/168 (32.74%), Postives = 75/168 (44.64%), Query Frame = 3
Query:   99 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGG-THRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            D++ ++   + LP+V     RPD++     +   N  QPY     AG QTSA SWG+GR V+++PR+  G    R  Q        GGR   P K       KIN  +KR              LV ARGHK     E+P V  D+ E + K    +  L+  G Y D
Sbjct:    8 DLSGNSKGEIALPEVFSEIFRPDLIKKAVLSAQANRLQPYGTKLYAGMQTSAHSWGSGRGVAQVPRISNGSRVARIPQAV------GGRRAHPPKTETDRTEKINKKEKRLAVRSAIAATIDADLVKARGHKF--TAEVPFVADDAIEGLVKIKEVISFLQAAGLYDD 167          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_METMA (50S ribosomal protein L4P OS=Methanosarcina mazei GN=rpl4p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.242e-16
Identity = 53/167 (31.74%), Postives = 77/167 (46.11%), Query Frame = 3
Query:   99 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            D+       + LP V  A  RPD++         N  QPY  S  AG +TSA  WG+GR VS +PR+       + + A     +GGR   P K       K+N  ++RY           P+LV  RGH  E   E+P+V  +  E++E+T   ++ L+  G Y D
Sbjct:    8 DLTGRTVGEIELPAVFDADYRPDLIKKAVLAAQANRLQPYGPSLYAGMKTSATGWGSGRGVSHVPRL-----KNSSRAARVPHAKGGRRAHPPKPEADRSEKVNTKERRYAIRSAIAATIDPTLVNLRGHIFEA--ELPIVAVNDLENLERTKQVIEFLEAAGLYED 167          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_METMP (50S ribosomal protein L4P OS=Methanococcus maripaludis GN=rpl4p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.823e-16
Identity = 59/175 (33.71%), Postives = 82/175 (46.86%), Query Frame = 3
Query:   75 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            + V +L+G    D    + LP V +A  RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   ES+ KT   L+V K +   AD
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFEAEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLVKTKEVLEVFKTLKLDAD 167          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_HALSA (50S ribosomal protein L4P OS=Halobacterium salinarium GN=rpl4p PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.522e-16
Identity = 56/175 (32.00%), Postives = 82/175 (46.86%), Query Frame = 3
Query:   75 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            +TV+ L+GD A     T+ LP V +  +RPD+V         N  Q Y     AG +T+AES G+GR ++ +P+         GQGA      GGR   P K  +     +N  +++              LV  RGH  +   E PLVVSD  E + KT   + +L+ +G +AD
Sbjct:    3 VTVRDLDGDDA----GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKA-------NGQGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKTQDVVSLLEALGVHAD 166          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_HALS3 (50S ribosomal protein L4P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.522e-16
Identity = 56/175 (32.00%), Postives = 82/175 (46.86%), Query Frame = 3
Query:   75 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            +TV+ L+GD A     T+ LP V +  +RPD+V         N  Q Y     AG +T+AES G+GR ++ +P+         GQGA      GGR   P K  +     +N  +++              LV  RGH  +   E PLVVSD  E + KT   + +L+ +G +AD
Sbjct:    3 VTVRDLDGDDA----GTLDLPRVFEEPVRPDLVKRAVLAAQANRTQEYGADEYAGLRTTAESQGSGRGMAHVPKA-------NGQGARVPQTVGGRKAHPPKAEKDHGLDVNDKERKAAVRAAVAATTDSELVADRGHNFDDDVEFPLVVSDDFEDLVKTQDVVSLLEALGVHAD 166          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_METM7 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.518e-16
Identity = 58/175 (33.14%), Postives = 81/175 (46.29%), Query Frame = 3
Query:   75 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            + V +L+G    D    + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   ES+ KT   L+V K +   AD
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNADFESLAKTKEVLEVFKTLKLDAD 167          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_METM5 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.898e-15
Identity = 57/175 (32.57%), Postives = 79/175 (45.14%), Query Frame = 3
Query:   75 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            + V +L+G    D    + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  +K             P +V ARGHKIE VP +PLVV+   E + KT   L V K +   AD
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINKKEKLKALASAIAASAIPEIVSARGHKIEGVPSLPLVVNAEFEGLVKTKEVLDVFKALNLAAD 167          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_HALLT (50S ribosomal protein L4P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.211e-15
Identity = 58/174 (33.33%), Postives = 82/174 (47.13%), Query Frame = 3
Query:   78 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            TV  L+G    DA S V LP + + + RPD++G   S    N +Q Y     AG +T AES+G+GR ++ IPR       R    A       GR   P K  +   + +N  +++               V  RGH  +   ++PLVVSD  E + KT  AL VL+ +GA AD
Sbjct:    4 TVHDLDGG---DAGS-VELPAIFETAFRPDLIGRAVSAAQANRKQAYGADEFAGLRTPAESFGSGRGLAHIPR--SENVARRVPNAV-----SGRAAHPPKAEKDQTKSLNDKERQLAIRSAIAATADAETVAERGHAFDEDLDLPLVVSDEFEDLNKTQEALGVLEAVGADAD 166          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_ARCFU (50S ribosomal protein L4P OS=Archaeoglobus fulgidus GN=rpl4p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.211e-15
Identity = 55/173 (31.79%), Postives = 79/173 (45.66%), Query Frame = 3
Query:   81 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            V +L+G++  +    + LP+V     RPDI+      +  + RQPY  +  +G   S E+WG G   +R+PR   G      +        GGR   P K  R+W  KIN  + R              LV  R H  E   E+P VVS+  ESV++T    +V + IG YAD
Sbjct:    5 VLNLKGEVTEE----IELPEVFAEEFRPDIIKRAVLALQSHRRQPYGPNPLSGVDYSWENWGPGHGYARVPRWKLG-----RRAVVVPQAVGGRRAHPPKPERKWAEKINKKEMRKALKSAIAATANEELVRQRSHVFE--GELPKVVSNELESVKRTKDVAEVFRAIGVYAD 166          
The following BLAST results are available for this feature:
BLAST of DN617530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL4_PYRAE1.314e-1633.7850S ribosomal protein L4P OS=Pyrobaculum aerophilu... [more]
RL4_METBU1.314e-1632.7450S ribosomal protein L4P OS=Methanococcoides burt... [more]
RL4_METMA2.242e-1631.7450S ribosomal protein L4P OS=Methanosarcina mazei ... [more]
RL4_METMP3.823e-1633.7150S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_HALSA6.522e-1632.0050S ribosomal protein L4P OS=Halobacterium salinar... [more]
RL4_HALS36.522e-1632.0050S ribosomal protein L4P OS=Halobacterium salinar... [more]
RL4_METM78.518e-1633.1450S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_METM51.898e-1532.5750S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_HALLT7.211e-1533.3350S ribosomal protein L4P OS=Halorubrum lacusprofu... [more]
RL4_ARCFU7.211e-1531.7950S ribosomal protein L4P OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617530 ID=DN617530; Name=DN617530; organism=Citrus sinensis; type=EST; length=602bp
CTCAACTCTCCCCCTTTCCCCATACCCCCCCAAAAAAAAACAAAAAAGCT
ATGGCCGCCGCCGCCCGTCCTTTGATTACCGTCCAGTCTTTGGAAGGTGA
CATGGCCACCGACGCAAGCTCCACCGTCCCTTTGCCCGACGTCATGAAGG
CCTCTATCCGACCCGACATCGTGGGCTTTGTCCACTCTAACATCTCCAAG
AACAGTCGCCAGCCTTACGCCGTTTCCAGGAAGGCAGGGCACCAGACCTC
CGCCGAATCATGGGGTACCGGTCGCGCCGTCTCCCGTATTCCCCGTGTCC
CCGGAGGCGGTACCCACCGTGCCGGCCAGGGAGCCTTCGGTAACATGTGT
CGCGGTGGTCGCATGTTCGCTCCCACAAAGATCTGGCGCCGATGGCACCG
TAAGATCAACGTCAATCAGAAGCGATACGCCATCGTTTCCGCCATTGCCG
CCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGGTCACAAGATCGAGACT
GTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCGCCGAGAGTGTGGAGAA
AACATCAGCTGCCCTTAAAGTTCTGAAGCAGATCGGTGCATATGCTGACG
CC
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