DN617530

Overview
NameDN617530
Unique NameDN617530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_META3 (50S ribosomal protein L4P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 50/156 (32.05%), Postives = 72/156 (46.15%), Query Frame = 3
Query:  132 LPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            L  V +   RPD++     +      QP  V   AG +TSA+S G G   +R+ R   G       GAF     GGR   P K+ +  H ++N  ++               +V  RGH +ETVP +PL+VSD  ES++KT   L+  K +G   D
Sbjct:   18 LSAVFETEYRPDLIKRAFLSSFTARLQPKGVDLMAGKRTSAKSIGKGHGRARVQRTGQGA------GAFVPQAVGGRRCHPPKVEKILHERVNKKERLKALASAIAASANIEMVKNRGHVVETVPSVPLIVSDDFESLKKTKEVLETFKNLGLDGD 167          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_METM6 (50S ribosomal protein L4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-14
Identity = 56/175 (32.00%), Postives = 79/175 (45.14%), Query Frame = 3
Query:   75 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            + V +L+G    D    + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  ++             P +V ARGHKIE VP +PLVV+   ES+ KT   L V   +   AD
Sbjct:    3 VKVYNLDGSEKGD----IELPAVFETEYRPDLIKRAVISSLTAKLQPKGCDAFAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANPEIVSARGHKIEGVPSLPLVVNAEFESLAKTKEVLGVFTALKLDAD 167          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_METVS (50S ribosomal protein L4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.740e-14
Identity = 55/175 (31.43%), Postives = 78/175 (44.57%), Query Frame = 3
Query:   75 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            + V +L+G         + LP V +   RPD++     +      QP      AG++TSA+S G G   +R+ R   G       GAF     GGR   P K+ +    +IN  ++               +V ARGHKIE VP +PLVV+   ES+ KT   L V K +   AD
Sbjct:    3 VKVYNLDGS----EKGAIELPSVFETEYRPDVIKRAVISSLTARLQPKGSDPLAGYRTSAKSIGKGHGKARVRRTAQGA------GAFVPQAVGGRRAHPPKVEKILFERINRKERLKALASAIAASANSEIVAARGHKIEGVPSLPLVVNAEFESLVKTKEVLSVFKALKLEAD 167          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_METHJ (50S ribosomal protein L4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.972e-14
Identity = 55/175 (31.43%), Postives = 83/175 (47.43%), Query Frame = 3
Query:   81 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSR--QPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            V +L G +A +    + LP V  +  RPD++    + I++ SR  QP+     AG   SA  WG+GR VS +PR+       + + A     +GGR   P K+ +   R IN  +KR            P LV +RGH       +P V+S   ES++KT   +  L+ +G Y D
Sbjct:    5 VLTLTGSVAHE----IELPPVFSSEFRPDLIK--KAVIAQQSRRYQPHGAYVYAGITASAVGWGSGRGVSHVPRL-----KNSSRAAKVPQAKGGREAHPPKVEKVLIRNINQKEKRKALNSAIAATISPELVRSRGHVF--TGSLPYVLSGDFESLKKTKEVIAALRAVGVYGD 166          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_METTP (50S ribosomal protein L4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.041e-13
Identity = 53/167 (31.74%), Postives = 72/167 (43.11%), Query Frame = 3
Query:   99 DMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            D++ +    + LP +     RPD++         N  QPY     AG  TSA SWG G  VSR+PR+  G      + A   M RGGR   P    +    KIN  ++             P +V ARGH      E+P+VV    ES+ KTS   + L   G + D
Sbjct:    7 DISGNPVGEIVLPAIFDEEYRPDLIKRAVLAAQANRLQPYGPHFYAGMNTSARSWGPGHGVSRVPRIVTG-----RRAAAVPMARGGRASHPPVPSKVLSEKINEKERIKAIRSAVAATAKPDIVAARGHLFS--GELPIVVRGEIESISKTSELRRFLMAAGLWDD 166          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_METB6 (50S ribosomal protein L4P OS=Methanoregula boonei (strain 6A8) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.360e-13
Identity = 49/173 (28.32%), Postives = 79/173 (45.66%), Query Frame = 3
Query:   81 VQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            V+++EG +A D    + LP +     RPD++      +    RQP+     AG  +SA  WG+GR  S +PR+  G      + A     +GGR   P    +   ++IN  +K+              L+ +RGH+ E    +PL+  D  E++ KT   +  L  IG Y+D
Sbjct:    5 VKTIEGGVAKD----IELPAMFSEEYRPDLIRKAVLALQSTRRQPHGSYPYAGICSSAVGWGSGRGASHVPRLKNG-----SRAAKVPQAKGGREAHPPVTAKVLIKEINAKEKQKAFRSAVAASIRADLISSRGHRFEGT--VPLIFEDKFENLAKTQEVISALTNIGVYSD 166          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_THEAC (50S ribosomal protein L4P OS=Thermoplasma acidophilum GN=rpl4p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.776e-13
Identity = 48/175 (27.43%), Postives = 79/175 (45.14%), Query Frame = 3
Query:   75 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            + + S+ G+M  +    + LP+V    +R DI+      IS + RQPY  S  AG +    +   G  +SR+PR+ GG        A      GG+     +  +  + KIN  +++               V  RGH+ +   ++P+VV D  E + KT  A+ +LK +G Y D
Sbjct:    5 VPIYSVSGEMKGE----IDLPEVFDTEVREDIIRRAFRAISLSMRQPYGSSPLAGMRRVGHTTRPGLGISRMPRIAGGSRVVGIASAV-----GGKSAHSPRTTKNLYVKINDRERKMAKYSAIALTASVEAVKKRGHRFKEGLKLPIVVEDGVEGINKTKDAIALLKNLGVYED 170          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_SULSO (50S ribosomal protein L4P OS=Sulfolobus solfataricus GN=rpl4p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.957e-13
Identity = 48/158 (30.38%), Postives = 75/158 (47.47%), Query Frame = 3
Query:  126 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            V LP +    +R D++  V      +S QP      AG +TSAES+G    ++R+PRV       +G+ A      GGR+  P  + ++   + NV +KR             + V ARGH  +     P+VV+D   +++ TS   + LK+IG Y D
Sbjct:   23 VELPIIFSFPVRKDLIRRVFIAEFTHSLQPKGRDPNAGKRTSAESFGINLGMARVPRVKN-----SGEAALAPNTVGGRLAFPPSVNKKLAEEANVKEKRLAVISALSATADIAFVRARGHVFKDSVRFPIVVTDDIVNLKTTSEVEEFLKKIGVYDD 175          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_THEGJ (50S ribosomal protein L4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.504e-12
Identity = 50/175 (28.57%), Postives = 77/175 (44.00%), Query Frame = 3
Query:   75 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            + V +LEG+   +    + LP V     RPD++         +  QP      AG +   E+ G G  ++R+ R+           AF    RGGR   P K+ +     IN  ++R            P LV ARGH ++ VP  PLVV D  + V KT+   ++ K++G + D
Sbjct:    3 VKVFNLEGEPVEE----IELPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPLAGKRRVTENIGKGHGMARVERIKTPPRF----AAFVPFARGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANPDLVRARGHVVDNVPAFPLVVVDDLQKVFKTAQTREIFKKLGIWDD 169          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_SULAC (50S ribosomal protein L4P OS=Sulfolobus acidocaldarius GN=rpl4p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.504e-12
Identity = 48/175 (27.43%), Postives = 82/175 (46.86%), Query Frame = 3
Query:   75 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            ++V  L+G+   +    + LP      +R D++  V  +    S QP      AG +TSA S+G    ++R+PRV G     +G+ A      GGR+  P    +R   ++N+ +K+            P+ V ARGH+  T   +P+++ D  E++ K    + +LK IG   D
Sbjct:   10 VSVLDLKGNQLEE----IELPLFFSYPVRKDLIRRVFLSEFTKSLQPKGRDPLAGKRTSALSFGINLGIARVPRVKG-----SGEAALAPNTVGGRLAFPPTTEKRLVEEVNLKEKKLGIISALAATADPNFVKARGHRF-TSNNVPIILVDDFENISKAKEIMDILKSIGVVDD 174          
The following BLAST results are available for this feature:
BLAST of DN617530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL4_META31.230e-1432.0550S ribosomal protein L4P OS=Methanococcus aeolicu... [more]
RL4_METM62.098e-1432.0050S ribosomal protein L4P OS=Methanococcus maripal... [more]
RL4_METVS2.740e-1431.4350S ribosomal protein L4P OS=Methanococcus vanniel... [more]
RL4_METHJ7.972e-1431.4350S ribosomal protein L4P OS=Methanospirillum hung... [more]
RL4_METTP1.041e-1331.7450S ribosomal protein L4P OS=Methanosaeta thermoph... [more]
RL4_METB61.360e-1328.3250S ribosomal protein L4P OS=Methanoregula boonei ... [more]
RL4_THEAC1.776e-1327.4350S ribosomal protein L4P OS=Thermoplasma acidophi... [more]
RL4_SULSO3.957e-1330.3850S ribosomal protein L4P OS=Sulfolobus solfataric... [more]
RL4_THEGJ1.504e-1228.5750S ribosomal protein L4P OS=Thermococcus gammatol... [more]
RL4_SULAC1.504e-1227.4350S ribosomal protein L4P OS=Sulfolobus acidocalda... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01F09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617530 ID=DN617530; Name=DN617530; organism=Citrus sinensis; type=EST; length=602bp
CTCAACTCTCCCCCTTTCCCCATACCCCCCCAAAAAAAAACAAAAAAGCT
ATGGCCGCCGCCGCCCGTCCTTTGATTACCGTCCAGTCTTTGGAAGGTGA
CATGGCCACCGACGCAAGCTCCACCGTCCCTTTGCCCGACGTCATGAAGG
CCTCTATCCGACCCGACATCGTGGGCTTTGTCCACTCTAACATCTCCAAG
AACAGTCGCCAGCCTTACGCCGTTTCCAGGAAGGCAGGGCACCAGACCTC
CGCCGAATCATGGGGTACCGGTCGCGCCGTCTCCCGTATTCCCCGTGTCC
CCGGAGGCGGTACCCACCGTGCCGGCCAGGGAGCCTTCGGTAACATGTGT
CGCGGTGGTCGCATGTTCGCTCCCACAAAGATCTGGCGCCGATGGCACCG
TAAGATCAACGTCAATCAGAAGCGATACGCCATCGTTTCCGCCATTGCCG
CCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGGTCACAAGATCGAGACT
GTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCGCCGAGAGTGTGGAGAA
AACATCAGCTGCCCTTAAAGTTCTGAAGCAGATCGGTGCATATGCTGACG
CC
back to top