DN617530

Overview
NameDN617530
Unique NameDN617530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_HALMA (50S ribosomal protein L4P OS=Haloarcula marismortui GN=rpl4p PE=1 SV=4)

HSP 1 Score: 69.3218 bits (168), Expect = 1.662e-11
Identity = 51/174 (29.31%), Postives = 80/174 (45.98%), Query Frame = 3
Query:   78 TVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            T+  L+G+  TD    V LPDV +  +R D++G        N +Q Y     AG +T AES+G+GR  + +P+   G   R  Q         GR   P K  +     +N  +++              LV  RGH+ +   E+P+VVSD  E + KT   + +L+ +  +AD
Sbjct:    4 TIYDLDGN--TDGE--VDLPDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPK-QDGRARRVPQAV------KGRSAHPPKTEKDRSLDLNDKERQLAVRSALAATADADLVADRGHEFDR-DEVPVVVSDDFEDLVKTQEVVSLLEALDVHAD 165          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_SULIL (50S ribosomal protein L4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl4p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 46/158 (29.11%), Postives = 72/158 (45.57%), Query Frame = 3
Query:  126 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            V LP +    +R DI+  V      +S QP      AG +TSAES+G    ++R+PRV       +G+ A      GGR+  P  + ++   + N  +K+               V ARGH  +     P+VV+D   S++  S   + L++IG Y D
Sbjct:   23 VELPFIFSFPVRKDIIRRVFLAEFTHSLQPKGRDPMAGKRTSAESFGINLGMARVPRV-----KNSGEAALAPNTVGGRLTFPPSVDKKLVEEANDKEKQLAVISALSATADKVFVKARGHVFKDSVSFPIVVTDDIVSLKTASEVEEFLEKIGVYDD 175          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_PYRKO (50S ribosomal protein L4P OS=Pyrococcus kodakaraensis GN=rpl4p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.317e-11
Identity = 47/175 (26.86%), Postives = 78/175 (44.57%), Query Frame = 3
Query:   75 ITVQSLEGDMATDASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            + V +LEG+   +    + LP V     RPD++         +  QP     +AG +   E+ G G  ++R+ R+           AF     GGR   P K+ +     IN  ++R              LV ARGH ++ V ++PLVV+D  + V KT+   ++ K++G + D
Sbjct:    3 VKVFNLEGEPVEE----IELPKVFSTPFRPDLIRRAVIASWTHRIQPQGRDPQAGKRRVTENIGKGHGMARVERIKTSPRF----AAFVPFAVGGRRTHPPKVEKIIWEDINKKERRLAIMSAIAATANYDLVRARGHVVDNVVQIPLVVTDDLQKVFKTAQTREIFKKLGVWDD 169          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_PYRAB (50S ribosomal protein L4P OS=Pyrococcus abyssi GN=rpl4p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.317e-11
Identity = 44/158 (27.85%), Postives = 70/158 (44.30%), Query Frame = 3
Query:  126 VPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            + LP V     RPD++         +  QP      AG +   E+ G G  ++R+ R+     +     AF    RGGR   P K+ +     IN  ++R              +V ARGH I+ VP++PL+V D  + V KT    ++ K++G + D
Sbjct:   16 IELPKVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHGMARVERLKTPPRY----AAFVPFARGGRRTHPPKVEKIIWEGINKKERRLAIMSAIAATANYDIVKARGHIIDNVPQLPLIVVDDLQKVSKTRETREIFKKLGIWDD 169          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_METJA (50S ribosomal protein L4P OS=Methanocaldococcus jannaschii GN=rpl4p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.317e-11
Identity = 46/163 (28.22%), Postives = 71/163 (43.56%), Query Frame = 3
Query:  111 DASSTVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSAESVEKTSAALKVLKQIGAYAD 599
            +A   + LP V +   RPD++     +      QP      AG +TSA++ G G   +R+ RVP G   R  Q        GGR   P K+ +    ++N  ++             P LV  RGH  ET   +P++V  S E ++KT     V +++G   D
Sbjct:   11 EAVKEIDLPAVFEEEYRPDLIKRAFLSAFTARLQPKGSDPLAGLRTSAKNIGKGHGRARVDRVPQGWAARVPQAV------GGRRAHPPKVEKILWERVNKKERIKAIKSAIAATANPELVKERGHVFET-ENLPIIVESSFEELQKTKDVFAVFEKLGISDD 166          
BLAST of DN617530 vs. ExPASy Swiss-Prot
Match: RL4_AERPE (50S ribosomal protein L4P OS=Aeropyrum pernix GN=rpl4p PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 6.317e-11
Identity = 46/160 (28.75%), Postives = 72/160 (45.00%), Query Frame = 3
Query:  123 TVPLPDVMKASIRPDIVGFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYXXXXXXXXXXXPSLVMARGHKIETVPEMPLVVSDSA-ESVEKTSAALKVLKQIGAYAD 599
            +V LP + +  +R D++     +      QP      AG +TSA S G GR V+R+PR+ G     + + A  NM RGGR   P ++ +     IN  +KR              LV  RGH+  +   +P+V+  S    +     A  +L+ +G Y D
Sbjct:   28 SVVLPQIFRFPVRKDLIRRAFLSEFTARLQPKGRDPMAGKRTSAVSLGVGRGVARVPRIKG-----SLRAALVNMARGGRAAHPPRVEKVLKEYINKKEKRLATISAISATSREDLVRQRGHRF-SAETLPIVLDSSVLAKISTAREARSLLESVGVYED 181          
The following BLAST results are available for this feature:
BLAST of DN617530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RL4_HALMA1.662e-1129.3150S ribosomal protein L4P OS=Haloarcula marismortu... [more]
RL4_SULIL4.837e-1129.1150S ribosomal protein L4P OS=Sulfolobus islandicus... [more]
RL4_PYRKO6.317e-1126.8650S ribosomal protein L4P OS=Pyrococcus kodakaraen... [more]
RL4_PYRAB6.317e-1127.8550S ribosomal protein L4P OS=Pyrococcus abyssi GN=... [more]
RL4_METJA6.317e-1128.2250S ribosomal protein L4P OS=Methanocaldococcus ja... [more]
RL4_AERPE6.317e-1128.7550S ribosomal protein L4P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617530 ID=DN617530; Name=DN617530; organism=Citrus sinensis; type=EST; length=602bp
CTCAACTCTCCCCCTTTCCCCATACCCCCCCAAAAAAAAACAAAAAAGCT
ATGGCCGCCGCCGCCCGTCCTTTGATTACCGTCCAGTCTTTGGAAGGTGA
CATGGCCACCGACGCAAGCTCCACCGTCCCTTTGCCCGACGTCATGAAGG
CCTCTATCCGACCCGACATCGTGGGCTTTGTCCACTCTAACATCTCCAAG
AACAGTCGCCAGCCTTACGCCGTTTCCAGGAAGGCAGGGCACCAGACCTC
CGCCGAATCATGGGGTACCGGTCGCGCCGTCTCCCGTATTCCCCGTGTCC
CCGGAGGCGGTACCCACCGTGCCGGCCAGGGAGCCTTCGGTAACATGTGT
CGCGGTGGTCGCATGTTCGCTCCCACAAAGATCTGGCGCCGATGGCACCG
TAAGATCAACGTCAATCAGAAGCGATACGCCATCGTTTCCGCCATTGCCG
CCTCCGCTGTCCCCTCACTTGTGATGGCCCGCGGTCACAAGATCGAGACT
GTTCCGGAAATGCCCCTGGTCGTCAGTGATTCCGCCGAGAGTGTGGAGAA
AACATCAGCTGCCCTTAAAGTTCTGAAGCAGATCGGTGCATATGCTGACG
CC
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