DN617527

Overview
NameDN617527
Unique NameDN617527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617527 vs. ExPASy Swiss-Prot
Match: HS90B_MOUSE (Heat shock protein HSP 90-beta OS=Mus musculus GN=Hsp90ab1 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.522e-28
Identity = 68/123 (55.28%), Postives = 87/123 (70.73%), Query Frame = -3
Query:  170 IMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADA-------DMPPLEDAADDAEGSKMEEVD 517
            IMKAQALRDNS  GYM +KK +EINP++PI+E LR++A+ADKNDK+VKD          L+SGFSL+DP T  NRI+RM+KLGL I+ED   A+        ++PPLE    D + S+MEEVD
Sbjct:  605 IMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVTAEEPSAAVPDEIPPLE---GDEDASRMEEVD 724          
BLAST of DN617527 vs. ExPASy Swiss-Prot
Match: HS90B_BOVIN (Heat shock protein HSP 90-beta OS=Bos taurus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 1.522e-28
Identity = 68/123 (55.28%), Postives = 87/123 (70.73%), Query Frame = -3
Query:  170 IMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADA-------DMPPLEDAADDAEGSKMEEVD 517
            IMKAQALRDNS  GYM +KK +EINP++PI+E LR++A+ADKNDK+VKD          L+SGFSL+DP T  NRI+RM+KLGL I+ED   A+        ++PPLE    D + S+MEEVD
Sbjct:  605 IMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVTAEEPSAAVPDEIPPLE---GDEDASRMEEVD 724          
BLAST of DN617527 vs. ExPASy Swiss-Prot
Match: HS90B_PONAB (Heat shock protein HSP 90-beta OS=Pongo abelii GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.987e-28
Identity = 68/123 (55.28%), Postives = 87/123 (70.73%), Query Frame = -3
Query:  170 IMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADA-------DMPPLEDAADDAEGSKMEEVD 517
            IMKAQALRDNS  GYM +KK +EINP++PI+E LR++A+ADKNDK+VKD          L+SGFSL+DP T  NRI+RM+KLGL I+ED   A+        ++PPLE    D + S+MEEVD
Sbjct:  605 IMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVAAEEPSAAVPDEIPPLE---GDEDASRMEEVD 724          
BLAST of DN617527 vs. ExPASy Swiss-Prot
Match: HS90B_MACFA (Heat shock protein HSP 90-beta OS=Macaca fascicularis GN=Hsp90ab1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.987e-28
Identity = 68/123 (55.28%), Postives = 87/123 (70.73%), Query Frame = -3
Query:  170 IMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADA-------DMPPLEDAADDAEGSKMEEVD 517
            IMKAQALRDNS  GYM +KK +EINP++PI+E LR++A+ADKNDK+VKD          L+SGFSL+DP T  NRI+RM+KLGL I+ED   A+        ++PPLE    D + S+MEEVD
Sbjct:  605 IMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVAAEEPSAAVPDEIPPLE---GDEDASRMEEVD 724          
BLAST of DN617527 vs. ExPASy Swiss-Prot
Match: HS90B_HUMAN (Heat shock protein HSP 90-beta OS=Homo sapiens GN=HSP90AB1 PE=1 SV=4)

HSP 1 Score: 125.176 bits (313), Expect = 1.987e-28
Identity = 68/123 (55.28%), Postives = 87/123 (70.73%), Query Frame = -3
Query:  170 IMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADA-------DMPPLEDAADDAEGSKMEEVD 517
            IMKAQALRDNS  GYM +KK +EINP++PI+E LR++A+ADKNDK+VKD          L+SGFSL+DP T  NRI+RM+KLGL I+ED   A+        ++PPLE    D + S+MEEVD
Sbjct:  605 IMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVAAEEPNAAVPDEIPPLE---GDEDASRMEEVD 724          
BLAST of DN617527 vs. ExPASy Swiss-Prot
Match: HS90B_HORSE (Heat shock protein HSP 90-beta OS=Equus caballus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 1.987e-28
Identity = 68/123 (55.28%), Postives = 87/123 (70.73%), Query Frame = -3
Query:  170 IMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADA-------DMPPLEDAADDAEGSKMEEVD 517
            IMKAQALRDNS  GYM +KK +EINP++PI+E LR++A+ADKNDK+VKD          L+SGFSL+DP T  NRI+RM+KLGL I+ED   A+        ++PPLE    D + S+MEEVD
Sbjct:  605 IMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVAAEEPSAAVPDEIPPLE---GDEDASRMEEVD 724          
BLAST of DN617527 vs. ExPASy Swiss-Prot
Match: HS90A_RAT (Heat shock protein HSP 90-alpha OS=Rattus norvegicus GN=Hsp90aa1 PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 2.595e-28
Identity = 69/123 (56.10%), Postives = 86/123 (69.92%), Query Frame = -3
Query:  170 IMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD-------ADMPPLEDAADDAEGSKMEEVD 517
            IMKAQALRDNS  GYM++KK +EINP++ I+E LR++A+ADKNDKSVKD          L+SGFSL+DP T  NRI+RM+KLGL I+ED    D        +MPPLE    D + S+MEEVD
Sbjct:  614 IMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTVDDTSAAVTEEMPPLE---GDDDTSRMEEVD 733          
BLAST of DN617527 vs. ExPASy Swiss-Prot
Match: HS90A_MOUSE (Heat shock protein HSP 90-alpha OS=Mus musculus GN=Hsp90aa1 PE=1 SV=4)

HSP 1 Score: 124.79 bits (312), Expect = 2.595e-28
Identity = 69/123 (56.10%), Postives = 86/123 (69.92%), Query Frame = -3
Query:  170 IMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD-------ADMPPLEDAADDAEGSKMEEVD 517
            IMKAQALRDNS  GYM++KK +EINP++ I+E LR++A+ADKNDKSVKD          L+SGFSL+DP T  NRI+RM+KLGL I+ED    D        +MPPLE    D + S+MEEVD
Sbjct:  614 IMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTVDDTSAAVTEEMPPLE---GDDDTSRMEEVD 733          
BLAST of DN617527 vs. ExPASy Swiss-Prot
Match: HS90A_CHICK (Heat shock protein HSP 90-alpha OS=Gallus gallus GN=HSP90AA1 PE=3 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 3.390e-28
Identity = 69/123 (56.10%), Postives = 87/123 (70.73%), Query Frame = -3
Query:  170 IMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDAD-------ADMPPLEDAADDAEGSKMEEVD 517
            IMKAQALRDNS  GYM++KK +EINP++ I+E LR++A+ADKNDKSVKD          L+SGFSL+DP T  NRI+RM+KLGL I+ED   A+        +MPPLE    D + S+MEEVD
Sbjct:  609 IMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDTAAEEASPAVTEEMPPLE---GDDDTSRMEEVD 728          
BLAST of DN617527 vs. ExPASy Swiss-Prot
Match: HS90B_CHICK (Heat shock cognate protein HSP 90-beta OS=Gallus gallus GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.782e-28
Identity = 68/123 (55.28%), Postives = 87/123 (70.73%), Query Frame = -3
Query:  170 IMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDXXXXXXXXXXLTSGFSLDDPNTFGNRIHRMLKLGLSIEEDAGDADA-------DMPPLEDAADDAEGSKMEEVD 517
            IMKAQALRDNS  GYM +KK +EINP++PI+E LR++ADA+KNDK+VKD          L+SGFSL+DP T  NRI+RM+KLGL I+ED   A+        ++PPLE    D + S+MEEVD
Sbjct:  606 IMKAQALRDNSTMGYMMAKKHLEINPDHPIVETLRQKADANKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYRMIKLGLGIDEDEVIAEESSIAPPDEIPPLE---GDEDTSRMEEVD 725          
The following BLAST results are available for this feature:
BLAST of DN617527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
HS90B_MOUSE1.522e-2855.28Heat shock protein HSP 90-beta OS=Mus musculus GN=... [more]
HS90B_BOVIN1.522e-2855.28Heat shock protein HSP 90-beta OS=Bos taurus GN=HS... [more]
HS90B_PONAB1.987e-2855.28Heat shock protein HSP 90-beta OS=Pongo abelii GN=... [more]
HS90B_MACFA1.987e-2855.28Heat shock protein HSP 90-beta OS=Macaca fascicula... [more]
HS90B_HUMAN1.987e-2855.28Heat shock protein HSP 90-beta OS=Homo sapiens GN=... [more]
HS90B_HORSE1.987e-2855.28Heat shock protein HSP 90-beta OS=Equus caballus G... [more]
HS90A_RAT2.595e-2856.10Heat shock protein HSP 90-alpha OS=Rattus norvegic... [more]
HS90A_MOUSE2.595e-2856.10Heat shock protein HSP 90-alpha OS=Mus musculus GN... [more]
HS90A_CHICK3.390e-2856.10Heat shock protein HSP 90-alpha OS=Gallus gallus G... [more]
HS90B_CHICK5.782e-2855.28Heat shock cognate protein HSP 90-beta OS=Gallus g... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617527 ID=DN617527; Name=DN617527; organism=Citrus sinensis; type=EST; length=540bp
AAGCATTTGCAAAACAATAAAACAAAACCTCCACCAAAGAGGGAAAATAA
AAATATAAAAGCACTAATCCCACAGTACTACCACCACAGAACGCATAACA
AAAAGAAACTACCTAGTTAAAAGAGTTTCATGAAAAAAGACTAGTATATC
AGACTATTATAGCTTCTTAATCAACTTCCTCCATCTTGCTGCCCTCAGCA
TCGTCAGCAGCATCCTCCAATGGTGGCATGTCAGCATCAGCATCACCAGC
ATCCTCCTCGATGCTCAGCCCGAGTTTCAACATCCTGTGGATTCTGTTGC
CGAAAGTGTTAGGGTCATCAAGGCTGAAACCAGAAGTGAGGAGAGCAGTC
TCAAAGAGCAGAAGGACAAGGTCCTTCACAGACTTGTCATTCTTGTCCGC
ATCAGCCCTCTTCCTGAGCTCCTCCATGATGGGGTTCTCCGGATTGATCT
CCATGGTCTTCTTGCTGGACATGTAACCAGCCATGCTGTTGTCTCTCAAG
GCCTGAGCCTTCATGATCCCTCTCCATGTTGGCTGTCCAT
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