DN617524

Overview
NameDN617524
Unique NameDN617524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig512 contig Csv1_Contig512:96..846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 419.853 bits (1078), Expect = 7.511e-117
Identity = 201/232 (86.64%), Postives = 211/232 (90.95%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSG---DSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TG+Y G   +SDLQLERINVY+NEASGGRYVPRAVLMDLEPGTMDS+RSGP+GQIFRPDN VFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISK+REEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+FGDLNHLI
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKGTAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNLVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLI 232          
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB_CHLIN (Tubulin beta chain OS=Chlamydomonas incerta GN=TUBB PE=3 SV=1)

HSP 1 Score: 419.468 bits (1077), Expect = 9.809e-117
Identity = 200/229 (87.34%), Postives = 209/229 (91.27%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MREI+HIQGGQCGNQIGAKFWEV+ DEHG+D TG Y GDSDLQLERINVY+NEA+GGRYVPRA+LMDLEPGTMDSVRSGP+GQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQVCH              ISKIREEYPDRMMLTFSV PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TPTFGDLNHLI
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGVDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLI 229          
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB7_ARATH (Tubulin beta-7 chain OS=Arabidopsis thaliana GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 418.313 bits (1074), Expect = 2.185e-116
Identity = 201/229 (87.77%), Postives = 210/229 (91.70%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MREILHIQGGQCGNQIG+KFWEV+  EHGID TG+Y GDS+LQLER+NVYYNEAS GRYVPRAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMM+TFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TP+FGDLNHLI
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLI 229          
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB1_PEA (Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 418.313 bits (1074), Expect = 2.185e-116
Identity = 200/229 (87.34%), Postives = 210/229 (91.70%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MR+ILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y+GDSDLQLERI+VYYNEASGGR+VPRAVLMDLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADE MVLDNEALYDICFR LKL+ P+FGDLNHLI
Sbjct:    1 MRQILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERIDVYYNEASGGRFVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVLDNEALYDICFRILKLSNPSFGDLNHLI 229          
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB1_MAIZE (Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 417.927 bits (1073), Expect = 2.854e-116
Identity = 202/229 (88.21%), Postives = 208/229 (90.83%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MREILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y GDSDLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDSVRSGP+G IFRPDNFVFGQSGAGNN AKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+FGDLNHLI
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYGGDSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNSAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSAMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLI 229          
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB2_LUPAL (Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 416.772 bits (1070), Expect = 6.358e-116
Identity = 200/229 (87.34%), Postives = 208/229 (90.83%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MREILHIQGGQCGNQIGAKFWEV+C EHGID TG+Y GD+ LQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDS+RSG +GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+FGDLNHLI
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYEGDNVLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGTYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLI 229          
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 415.231 bits (1066), Expect = 1.850e-115
Identity = 198/229 (86.46%), Postives = 209/229 (91.27%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MREILHIQGGQCGNQIG+KFWEV+CDEHGID TG+   +SDLQL+RINVYYNEASGGRYVPRAVLMDLEPGTMDSV++GP GQIFRPDNF+FGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENC+CLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLS HQLVENADECMVLDNEALYDICFRTLKL+TP+FGDLNHLI
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGQVLSESDLQLDRINVYYNEASGGRYVPRAVLMDLEPGTMDSVKTGPHGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCECLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSGHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLI 229          
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB2_SOYBN (Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 414.461 bits (1064), Expect = 3.156e-115
Identity = 201/229 (87.77%), Postives = 207/229 (90.39%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MRE LHIQGGQCGNQIGAKFWEV+C EHGID TG+Y GDS+LQLERINVYYNEAS GR+V RAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADE MVLDNEALYDICFRTLKL TP+FGDLNHLI
Sbjct:    1 MRESLHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYGGDSELQLERINVYYNEASCGRFVRRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMVLDNEALYDICFRTLKLTTPSFGDLNHLI 229          
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB_POLAG (Tubulin beta chain OS=Polytomella agilis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 413.69 bits (1062), Expect = 5.383e-115
Identity = 199/229 (86.90%), Postives = 207/229 (90.39%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MREI+HIQGGQCGNQIGAKFWEV+ DEHGID TG   GDSDLQLERINVY+NEA+G RYVPRA+LMDLEPGTMDSVRSGP+GQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQVCH              ISKIREEYPDRMMLTFSV PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TPTFGDLNHLI
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTALGDSDLQLERINVYFNEATGSRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLI 229          
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB3_MAIZE (Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 413.305 bits (1061), Expect = 7.030e-115
Identity = 199/229 (86.90%), Postives = 205/229 (89.52%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MREILHIQGGQCGNQIGAKFWEVIC EHG+D TG YSG S  QLERINVYYNEA GGRYVPRAVLMDLEPGTM+S+R+GPFG IFRPDNFV+GQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL  P+FGDLNHLI
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDSTGCYSGVSPQQLERINVYYNEAGGGRYVPRAVLMDLEPGTMESIRAGPFGGIFRPDNFVYGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLI 229          
The following BLAST results are available for this feature:
BLAST of DN617524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBB1_SOLTU7.511e-11786.64Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1... [more]
TBB_CHLIN9.809e-11787.34Tubulin beta chain OS=Chlamydomonas incerta GN=TUB... [more]
TBB7_ARATH2.185e-11687.77Tubulin beta-7 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB1_PEA2.185e-11687.34Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=... [more]
TBB1_MAIZE2.854e-11688.21Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=... [more]
TBB2_LUPAL6.358e-11687.34Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=... [more]
TBB2_DAUCA1.850e-11586.46Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=... [more]
TBB2_SOYBN3.156e-11587.77Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 ... [more]
TBB_POLAG5.383e-11586.90Tubulin beta chain OS=Polytomella agilis GN=TUBB1 ... [more]
TBB3_MAIZE7.030e-11586.90Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F05_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617524 ID=DN617524; Name=DN617524; organism=Citrus sinensis; type=EST; length=751bp
GTCTTCCCAAACTTTCTCGCAAATTTTTCTCTCCCTTTCCCGCGAAACAA
ACAGAACAAAAAATGAGAGAAATCTTGCACATCCAGGGTGGGCAATGCGG
CAACCAGATCGGAGCCAAGTTCTGGGAGGTCATCTGCGACGAGCACGGAA
TTGACCACACGGGGAAGTACAGCGGAGACTCCGATCTCCAACTCGAACGC
ATCAATGTTTATTACAACGAGGCCAGCGGCGGAAGGTACGTCCCACGCGC
CGTGTTGATGGATCTGGAGCCTGGGACCATGGACTCTGTTAGATCCGGTC
CGTTCGGGCAGATATTTCGCCCCGATAACTTCGTGTTCGGGCAGTCTGGC
GCTGGCAATAACTGGGCCAAGGGTCATTACACCGAAGGCGCTGAGTTGAT
CGACTCTGTTCTGGATGTTGTTAGAAAGGAAGCTGAGAATTGTGATTGCT
TGCAGGGATTTCAAGTATGTCATTCTTTGGGAGGAGGTACTGGTTCTGGT
ATGGGAACCCTTCTTATTTCCAAGATCAGGGAGGAGTATCCAGATCGCAT
GATGTTGACATTTTCCGTCTTCCCGTCTCCTAAGGTATCTGACACGGTTG
TTGAGCCTTACAATGCTACCCTCTCAGTACATCAGCTTGTTGAGAATGCC
GATGAGTGTATGGTGCTAGATAATGAAGCTCTATATGATATTTGCTTCAG
AACTCTCAAGCTCGCCACCCCTACTTTTGGTGATCTTAACCATCTTATCT
C
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