DN617524

Overview
NameDN617524
Unique NameDN617524
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig512 contig Csv1_Contig512:96..846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB_STYLE (Tubulin beta chain OS=Stylonychia lemnae GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 1.122e-112
Identity = 194/229 (84.72%), Postives = 204/229 (89.08%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MREI+HIQGGQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINVYYNEA+GGRYVPRAVLMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H              ISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVENADE M +DNEALYDICFRTLKL TPT+GDLNHL+
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMATFSVVPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRTLKLTTPTYGDLNHLV 229          
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB3_PEA (Tubulin beta-3 chain (Fragment) OS=Pisum sativum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 405.216 bits (1040), Expect = 1.914e-112
Identity = 192/220 (87.27%), Postives = 202/220 (91.82%), Query Frame = 3
Query:   90 GQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            GQCGNQIG+KFWEV+CDEHGID TG+Y G+SDLQLER+NVYYNEAS GR+VPRA+LMDLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL TP+FGDLNHLI
Sbjct:    1 GQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRFVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLI 220          
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB1_SOYBN (Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 405.216 bits (1040), Expect = 1.914e-112
Identity = 193/229 (84.28%), Postives = 203/229 (88.65%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MREILH+Q GQCGNQIG KFWEV+CDEHGID TG Y G+  LQLER+NVYYNEASGGRYVPRAVLMDLEPGTMDS+RSGPFG+IFRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQ+CH              ISKIREEYPDRMMLTFSVF  P+ SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL  P+FGDLNHLI
Sbjct:    1 MREILHVQAGQCGNQIGGKFWEVMCDEHGIDATGNYVGNFHLQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRSGPFGKIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFAVPEGSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLI 229          
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB1_ANEPH (Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 403.29 bits (1035), Expect = 7.275e-112
Identity = 196/229 (85.59%), Postives = 202/229 (88.21%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MREILH+QGGQCGNQIGAKFWEV+C EHGID TG Y GDS+ QLER+NVYYNEAS GRYVPRAVLMDLEPGTMDSVRSG +GQIFRPDNFVFGQSGAGNNWAKG YTEGAELIDSVL VVRKEAENCDCLQGFQVCH              ISKIREEYPDRMM+TFSVF SPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDI  RTLKL TPTFGDLNHLI
Sbjct:    1 MREILHVQGGQCGNQIGAKFWEVVCTEHGIDPTGTYRGDSETQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGHYGQIFRPDNFVFGQSGAGNNWAKGXYTEGAELIDSVLAVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFASPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIXLRTLKLVTPTFGDLNHLI 229          
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB_TOXGO (Tubulin beta chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 402.905 bits (1034), Expect = 9.501e-112
Identity = 190/229 (82.97%), Postives = 205/229 (89.52%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MREI+H+QGGQCGNQIGAKFWEVI DEHGID TG Y GDSDLQLERINV+YNEA+GGR+VPRA+LMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H              ISK+REEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE  V+DNEALYDICFRTLKL TPT+GDLNHL+
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGIDPTGTYCGDSDLQLERINVFYNEATGGRFVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLV 229          
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB_THAWE (Tubulin beta chain OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 2.117e-111
Identity = 189/229 (82.53%), Postives = 205/229 (89.52%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MREI+HIQGGQCGNQIGAKFWEV+ DEHG+D TG Y GDSDLQLERINVY+NEA+GGRYVPRA+LMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDC+QGFQ+ H              ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVENAD+C  LDNEALYDICFRTLKL TPT+GDLNHLI
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVMSDEHGVDPTGTYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCMQGFQLTHSMGGGTGAGMGTLLISKIREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFALDNEALYDICFRTLKLTTPTYGDLNHLI 229          
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB_EIMTE (Tubulin beta chain OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 401.749 bits (1031), Expect = 2.117e-111
Identity = 192/229 (83.84%), Postives = 204/229 (89.08%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MREI+H+QGGQCGNQIGAKFWEVI DEHGI  TG Y GDSDLQLERI+V+YNEA+GGRYVPRAVLMDLEPGTMDSVRSGPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQV H              ISK+REEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE  V+DNEALYDICFRTLKL TPT+GDLNHL+
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGIAPTGTYKGDSDLQLERISVFYNEATGGRYVPRAVLMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQVTHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLV 229          
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB_PHYCI (Tubulin beta chain OS=Phytophthora cinnamomi PE=3 SV=1)

HSP 1 Score: 400.593 bits (1028), Expect = 4.715e-111
Identity = 189/229 (82.53%), Postives = 204/229 (89.08%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MRE++HIQGGQCGNQIGAKFWEVI DEHG+D TG Y GDSDLQLERINVYYNEA+GGRYVPRA+LMDLEPGTMDSVR+GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVENADE M LDNEALYDICFRTLKL  PT+GDLNHL+
Sbjct:    1 MRELVHIQGGQCGNQIGAKFWEVISDEHGVDPTGSYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMCTYSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMCLDNEALYDICFRTLKLTNPTYGDLNHLV 229          
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB_BABBO (Tubulin beta chain OS=Babesia bovis PE=3 SV=1)

HSP 1 Score: 400.593 bits (1028), Expect = 4.715e-111
Identity = 191/229 (83.41%), Postives = 204/229 (89.08%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MREI+HIQ GQCGNQIGAKFWEVI DEHGID +G Y GDSDLQLERI+V+YNEA+GGRYVPRAVLMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H              ISKIREEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE  V+DNEALYDICFRTLKL TPT+GDLNHL+
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDQSGTYHGDSDLQLERIDVFYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLV 229          
BLAST of DN617524 vs. ExPASy Swiss-Prot
Match: TBB_PLAFA (Tubulin beta chain OS=Plasmodium falciparum PE=3 SV=1)

HSP 1 Score: 398.667 bits (1023), Expect = 1.792e-110
Identity = 188/229 (82.10%), Postives = 205/229 (89.52%), Query Frame = 3
Query:   63 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLI 749
            MREI+HIQ GQCGNQIGAKFWEVI DEHGID +G YSGDSDLQLER++V+YNEA+GGRYVPRA+LMDLEPGTMDSVR+GPFGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDV+RKEAE CDCLQGFQ+ H              ISKIREEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE  V+DNEALYDICFRTLKL TPT+GDLNHL+
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGTYSGDSDLQLERVDVFYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDAVLDVLRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDICFRTLKLTTPTYGDLNHLV 229          
The following BLAST results are available for this feature:
BLAST of DN617524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBB_STYLE1.122e-11284.72Tubulin beta chain OS=Stylonychia lemnae GN=TUBB1 ... [more]
TBB3_PEA1.914e-11287.27Tubulin beta-3 chain (Fragment) OS=Pisum sativum G... [more]
TBB1_SOYBN1.914e-11284.28Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 ... [more]
TBB1_ANEPH7.275e-11285.59Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB... [more]
TBB_TOXGO9.501e-11282.97Tubulin beta chain OS=Toxoplasma gondii PE=3 SV=1[more]
TBB_THAWE2.117e-11182.53Tubulin beta chain OS=Thalassiosira weissflogii PE... [more]
TBB_EIMTE2.117e-11183.84Tubulin beta chain OS=Eimeria tenella PE=2 SV=1[more]
TBB_PHYCI4.715e-11182.53Tubulin beta chain OS=Phytophthora cinnamomi PE=3 ... [more]
TBB_BABBO4.715e-11183.41Tubulin beta chain OS=Babesia bovis PE=3 SV=1[more]
TBB_PLAFA1.792e-11082.10Tubulin beta chain OS=Plasmodium falciparum PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F05_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617524 ID=DN617524; Name=DN617524; organism=Citrus sinensis; type=EST; length=751bp
GTCTTCCCAAACTTTCTCGCAAATTTTTCTCTCCCTTTCCCGCGAAACAA
ACAGAACAAAAAATGAGAGAAATCTTGCACATCCAGGGTGGGCAATGCGG
CAACCAGATCGGAGCCAAGTTCTGGGAGGTCATCTGCGACGAGCACGGAA
TTGACCACACGGGGAAGTACAGCGGAGACTCCGATCTCCAACTCGAACGC
ATCAATGTTTATTACAACGAGGCCAGCGGCGGAAGGTACGTCCCACGCGC
CGTGTTGATGGATCTGGAGCCTGGGACCATGGACTCTGTTAGATCCGGTC
CGTTCGGGCAGATATTTCGCCCCGATAACTTCGTGTTCGGGCAGTCTGGC
GCTGGCAATAACTGGGCCAAGGGTCATTACACCGAAGGCGCTGAGTTGAT
CGACTCTGTTCTGGATGTTGTTAGAAAGGAAGCTGAGAATTGTGATTGCT
TGCAGGGATTTCAAGTATGTCATTCTTTGGGAGGAGGTACTGGTTCTGGT
ATGGGAACCCTTCTTATTTCCAAGATCAGGGAGGAGTATCCAGATCGCAT
GATGTTGACATTTTCCGTCTTCCCGTCTCCTAAGGTATCTGACACGGTTG
TTGAGCCTTACAATGCTACCCTCTCAGTACATCAGCTTGTTGAGAATGCC
GATGAGTGTATGGTGCTAGATAATGAAGCTCTATATGATATTTGCTTCAG
AACTCTCAAGCTCGCCACCCCTACTTTTGGTGATCTTAACCATCTTATCT
C
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