DN617523

Overview
NameDN617523
Unique NameDN617523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB4_MOUSE (Tubulin beta-4 chain OS=Mus musculus GN=Tubb4 PE=1 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 1.724e-59
Identity = 105/124 (84.68%), Postives = 122/124 (98.39%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLT +A+FRG+MS KEVDEQM++VQ+KNSSYFVEWIPNNVK++VCDIPP+GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  309 RYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB4_MACFA (Tubulin beta-4 chain OS=Macaca fascicularis GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.724e-59
Identity = 105/124 (84.68%), Postives = 122/124 (98.39%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLT +A+FRG+MS KEVDEQM++VQ+KNSSYFVEWIPNNVK++VCDIPP+GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  309 RYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB4_HUMAN (Tubulin beta-4 chain OS=Homo sapiens GN=TUBB4 PE=1 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 1.724e-59
Identity = 105/124 (84.68%), Postives = 122/124 (98.39%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLT +A+FRG+MS KEVDEQM++VQ+KNSSYFVEWIPNNVK++VCDIPP+GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  309 RYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB4_BOVIN (Tubulin beta-4 chain OS=Bos taurus GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.724e-59
Identity = 105/124 (84.68%), Postives = 122/124 (98.39%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLT +A+FRG+MS KEVDEQM++VQ+KNSSYFVEWIPNNVK++VCDIPP+GLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  309 RYLTVAAVFRGRMSMKEVDEQMLSVQSKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB6_ECTVR (Tubulin beta-6 chain OS=Ectocarpus variabilis GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.252e-59
Identity = 104/124 (83.87%), Postives = 121/124 (97.58%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLT + MFRG+MSTKEVDEQM+NV NKNSSYFVEWIPNNVK+S+CDIPPKGLKM++TF+GN+T+IQE+++RV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  309 RYLTCAVMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB3_GOSHI (Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.252e-59
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = -1 
Query:  272 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 619
            RYLTASAMFRGKMSTKE DEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP+GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+ YQQ
Sbjct:  309 RYLTASAMFRGKMSTKEADEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSGYQQ 424
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB1_HOMAM (Tubulin beta-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.252e-59
Identity = 105/124 (84.68%), Postives = 119/124 (95.97%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLT +A+FRG+MS KEVDEQM N+QNKNSS+FVEWIPNNVK++VCDIPP+G+KMASTFIGNST+I E+F+RV EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQ+ATADD
Sbjct:  313 RYLTVAAIFRGRMSMKEVDEQMYNIQNKNSSFFVEWIPNNVKTAVCDIPPRGIKMASTFIGNSTAIHELFKRVGEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATADD 436
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB2_HOMAM (Tubulin beta-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.941e-59
Identity = 104/124 (83.87%), Postives = 121/124 (97.58%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLT +A+FRG+MS +EVD+QM N+QNKNSS+FVEWIPNNVK++VCDIPP+GLKM++TFIGNST+IQE+F+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQ+ATADD
Sbjct:  314 RYLTVAAIFRGRMSMREVDDQMYNIQNKNSSFFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATADD 437
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB2_DROME (Tubulin beta-2 chain OS=Drosophila melanogaster GN=betaTub85D PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.941e-59
Identity = 104/124 (83.87%), Postives = 121/124 (97.58%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLT +A+FRG+MS KEVDEQM+N+QNKNSS+FVEWIPNN K++VCDIPP+GLKM++TFIGNST+IQE+F+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQ+ATAD+
Sbjct:  309 RYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSFFVEWIPNNCKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATADE 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB2_DROHY (Tubulin beta-2 chain OS=Drosophila hydei GN=betaTub85D PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.941e-59
Identity = 104/124 (83.87%), Postives = 121/124 (97.58%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLT +A+FRG+MS KEVDEQM+N+QNKNSS+FVEWIPNN K++VCDIPP+GLKM++TFIGNST+IQE+F+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQ+ATAD+
Sbjct:  309 RYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSFFVEWIPNNCKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATADE 432
The following BLAST results are available for this feature:
BLAST of DN617523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
TBB4_MOUSE1.724e-5984.68Tubulin beta-4 chain OS=Mus musculus GN=Tubb4 PE=1... [more]
TBB4_MACFA1.724e-5984.68Tubulin beta-4 chain OS=Macaca fascicularis GN=TUB... [more]
TBB4_HUMAN1.724e-5984.68Tubulin beta-4 chain OS=Homo sapiens GN=TUBB4 PE=1... [more]
TBB4_BOVIN1.724e-5984.68Tubulin beta-4 chain OS=Bos taurus GN=TUBB4 PE=2 S... [more]
TBB6_ECTVR2.252e-5983.87Tubulin beta-6 chain OS=Ectocarpus variabilis GN=T... [more]
TBB3_GOSHI2.252e-5994.83Tubulin beta-3 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB1_HOMAM2.252e-5984.68Tubulin beta-1 chain OS=Homarus americanus PE=2 SV... [more]
TBB2_HOMAM2.941e-5983.87Tubulin beta-2 chain OS=Homarus americanus PE=2 SV... [more]
TBB2_DROME2.941e-5983.87Tubulin beta-2 chain OS=Drosophila melanogaster GN... [more]
TBB2_DROHY2.941e-5983.87Tubulin beta-2 chain OS=Drosophila hydei GN=betaTu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617523 ID=DN617523; Name=DN617523; organism=Citrus sinensis; type=EST; length=619bp
TATCTCTTTAACTACTTAATACAAACATACATCATTTATATTGAAACACA
TCATACCCATCCCCCAATACAACGAGACAAGTTACATACCAATAAACATC
ACATTCTAATGATCCCTCAACAACAGAAACAATAATCACAAACTGAAAGA
GCGCCGACAAGAAATAAATTTCAGACAAACTGGCCCTGGAACATTAGAAA
AAGACACCTCATGCTGCAACTTCCTCTTCTTCTTCCTCGTACTCCTCGTC
GTCAGCAGTTGCATCCTGATACTGCTGGTACTCTGCCACCAAGTCATTCA
TGTTACTCTCAGCCTCGGTGAACTCCATCTCGTCCATTCCCTCACCGGTG
TACCAGTGCAAGAAAGCTTTCCTCCGAAACATAGCCGTAAATTGCTCACT
GACTCGCCTAAACATCTCCTGAATTGACGTTGAATTTCCAATGAAAGTGG
ATGCCATTTTCAGACCCTTAGGCGGGATGTCACACACGCTCGACTTGACA
TTATTTGGTATCCACTCGACAAAGTACGAAGAGTTCTTGTTTTGGACATT
GATCATTTGTTCATCAACCTCTTTAGTACTCATCTTACCACGGAACATGG
CCGAAGCAGTTAGGTAACG
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