DN617523

Overview
NameDN617523
Unique NameDN617523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB2_DROER (Tubulin beta-2 chain OS=Drosophila erecta GN=betaTub85D PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.941e-59
Identity = 104/124 (83.87%), Postives = 121/124 (97.58%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLT +A+FRG+MS KEVDEQM+N+QNKNSS+FVEWIPNN K++VCDIPP+GLKM++TFIGNST+IQE+F+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQ+ATAD+
Sbjct:  309 RYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSFFVEWIPNNCKTAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATADE 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB_TRITR (Tubulin beta chain OS=Trichuris trichiura PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.841e-59
Identity = 103/124 (83.06%), Postives = 121/124 (97.58%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLT +A+FRG+MS KEVDEQM+NVQNKN++YFVEWIPNNVK++VCDIPP+GLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQ+AT +D
Sbjct:  309 RYLTVAAIFRGRMSMKEVDEQMLNVQNKNNAYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATVED 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB5_ECTVR (Tubulin beta-5 chain OS=Ectocarpus variabilis GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.017e-59
Identity = 103/124 (83.06%), Postives = 121/124 (97.58%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLT + MFRG+MSTKEVDEQM+NV NKNSSYFVEWIPNNVK+S+CDIPPKGLKM++TF+GN+T+IQE+++RV+EQFT+MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  309 RYLTCAVMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTSMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB4_CHICK (Tubulin beta-4 chain OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.252e-58
Identity = 103/124 (83.06%), Postives = 119/124 (95.97%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLT + +FRG+MS KEVDEQM+ +Q+KNSSYFVEWIPNNVK +VCDIPP+GLKM+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  309 RYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB3_RAT (Tubulin beta-3 chain OS=Rattus norvegicus GN=Tubb3 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.252e-58
Identity = 103/124 (83.06%), Postives = 119/124 (95.97%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLT + +FRG+MS KEVDEQM+ +Q+KNSSYFVEWIPNNVK +VCDIPP+GLKM+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  309 RYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB3_MOUSE (Tubulin beta-3 chain OS=Mus musculus GN=Tubb3 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.252e-58
Identity = 103/124 (83.06%), Postives = 119/124 (95.97%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLT + +FRG+MS KEVDEQM+ +Q+KNSSYFVEWIPNNVK +VCDIPP+GLKM+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  309 RYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB3_MACFA (Tubulin beta-3 chain OS=Macaca fascicularis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.252e-58
Identity = 103/124 (83.06%), Postives = 119/124 (95.97%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLT + +FRG+MS KEVDEQM+ +Q+KNSSYFVEWIPNNVK +VCDIPP+GLKM+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  309 RYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB3_HUMAN (Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 3.252e-58
Identity = 103/124 (83.06%), Postives = 119/124 (95.97%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLT + +FRG+MS KEVDEQM+ +Q+KNSSYFVEWIPNNVK +VCDIPP+GLKM+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  309 RYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB3_BOVIN (Tubulin beta-3 chain OS=Bos taurus GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.252e-58
Identity = 103/124 (83.06%), Postives = 119/124 (95.97%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLT + +FRG+MS KEVDEQM+ +Q+KNSSYFVEWIPNNVK +VCDIPP+GLKM+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  309 RYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDIPPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB3_ANEPH (Tubulin beta-3 chain (Fragment) OS=Anemia phyllitidis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.252e-58
Identity = 109/123 (88.62%), Postives = 115/123 (93.50%), Query Frame = -1 
Query:  251 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD 619
            RYLTASAMFRGKMSTKEVDEQ+INVQNKNSSYFVEWIPNNVKSSVCDIPP GLKMA TFIGNS+SIQEMFRR +   TAMFRRKAFLHWYT EGMDEMEFTE ESNMNDLV+EYQQYQDA+A+
Sbjct:  105 RYLTASAMFRGKMSTKEVDEQLINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLKMACTFIGNSSSIQEMFRRDATSLTAMFRRKAFLHWYTWEGMDEMEFTEEESNMNDLVSEYQQYQDASAE 227
The following BLAST results are available for this feature:
BLAST of DN617523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
TBB2_DROER2.941e-5983.87Tubulin beta-2 chain OS=Drosophila erecta GN=betaT... [more]
TBB_TRITR3.841e-5983.06Tubulin beta chain OS=Trichuris trichiura PE=3 SV=... [more]
TBB5_ECTVR5.017e-5983.06Tubulin beta-5 chain OS=Ectocarpus variabilis GN=T... [more]
TBB4_CHICK3.252e-5883.06Tubulin beta-4 chain OS=Gallus gallus PE=1 SV=1[more]
TBB3_RAT3.252e-5883.06Tubulin beta-3 chain OS=Rattus norvegicus GN=Tubb3... [more]
TBB3_MOUSE3.252e-5883.06Tubulin beta-3 chain OS=Mus musculus GN=Tubb3 PE=1... [more]
TBB3_MACFA3.252e-5883.06Tubulin beta-3 chain OS=Macaca fascicularis GN=TUB... [more]
TBB3_HUMAN3.252e-5883.06Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1... [more]
TBB3_BOVIN3.252e-5883.06Tubulin beta-3 chain OS=Bos taurus GN=TUBB3 PE=2 S... [more]
TBB3_ANEPH3.252e-5888.62Tubulin beta-3 chain (Fragment) OS=Anemia phylliti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617523 ID=DN617523; Name=DN617523; organism=Citrus sinensis; type=EST; length=619bp
TATCTCTTTAACTACTTAATACAAACATACATCATTTATATTGAAACACA
TCATACCCATCCCCCAATACAACGAGACAAGTTACATACCAATAAACATC
ACATTCTAATGATCCCTCAACAACAGAAACAATAATCACAAACTGAAAGA
GCGCCGACAAGAAATAAATTTCAGACAAACTGGCCCTGGAACATTAGAAA
AAGACACCTCATGCTGCAACTTCCTCTTCTTCTTCCTCGTACTCCTCGTC
GTCAGCAGTTGCATCCTGATACTGCTGGTACTCTGCCACCAAGTCATTCA
TGTTACTCTCAGCCTCGGTGAACTCCATCTCGTCCATTCCCTCACCGGTG
TACCAGTGCAAGAAAGCTTTCCTCCGAAACATAGCCGTAAATTGCTCACT
GACTCGCCTAAACATCTCCTGAATTGACGTTGAATTTCCAATGAAAGTGG
ATGCCATTTTCAGACCCTTAGGCGGGATGTCACACACGCTCGACTTGACA
TTATTTGGTATCCACTCGACAAAGTACGAAGAGTTCTTGTTTTGGACATT
GATCATTTGTTCATCAACCTCTTTAGTACTCATCTTACCACGGAACATGG
CCGAAGCAGTTAGGTAACG
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