DN617523

Overview
NameDN617523
Unique NameDN617523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBA_EUPVA (Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 43/130 (33.08%), Postives = 72/130 (55.38%), Query Frame = -1
Query:  251 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPN---NVKSSVCDIPPKG----LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD 619
            +Y+    MFRG +  K+V+  +  ++ K +  FV+W P     +      + P G    +  A   I NST+I E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++    TA+
Sbjct:  311 KYMACCMMFRGDVVPKDVNAAVATIKTKRTIQFVDWSPGFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIETAE 440          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBAD_PHYPO (Tubulin alpha-1A chain OS=Physarum polycephalum GN=ALTA PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 39/124 (31.45%), Postives = 70/124 (56.45%), Query Frame = -1
Query:  272 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 619
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   + N+T+I E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  311 KYMACCLMYRGDVVPKDVNASVAVIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBA3_HOMAM (Tubulin alpha-3 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 41/131 (31.30%), Postives = 71/131 (54.20%), Query Frame = -1
Query:  251 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD 619
            +Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP  +          A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EFTEA  ++  L  +Y++    +AD
Sbjct:  311 KYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVGVDSAD 441          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBA2_PELFA (Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.358e-16
Identity = 40/131 (30.53%), Postives = 71/131 (54.20%), Query Frame = -1
Query:  251 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD 619
            +Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   + N+T+I E   R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++    TA+
Sbjct:  311 KYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETAE 441          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBA_XENLA (Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.079e-16
Identity = 41/131 (31.30%), Postives = 72/131 (54.96%), Query Frame = -1
Query:  251 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD 619
            +Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP          ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++    +AD
Sbjct:  311 KYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSAD 441          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBAN_PHYPO (Tubulin alpha-1B chain OS=Physarum polycephalum GN=ALTBN PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.079e-16
Identity = 42/132 (31.82%), Postives = 72/132 (54.55%), Query Frame = -1
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVC----DIPPKG----LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            +Y+    M+RG +  K+V   +  ++ K +  FV+W P   K  +      + P G    ++ A   I N+T+I E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++    T  D
Sbjct:  311 KYMACCLMYRGDVVPKDVTAAVAVIKTKRTIQFVDWCPTGFKCGINYQAPSVVPGGDLAKVQRALCMISNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETVGD 442          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.021e-16
Identity = 37/131 (28.24%), Postives = 73/131 (55.73%), Query Frame = -1
Query:  251 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD 619
            +Y+  + ++RG +  K+ +  +  ++ K +  FV+W P   K  +C+ PP  +        K +   + N+T+I   + R+  +F  ++ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++    +AD
Sbjct:  310 KYMACALLYRGDVVPKDTNAAVALIKTKRTIQFVDWCPTGFKLGICNEPPAHVPGGDLAKVKRSMCMLSNTTAISSAWSRLDHKFDLLYSKRAFVHWYVGEGMEEGEFSEARQDLAALEKDYEEVGMDSAD 440          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBA1B_PANTR (Tubulin alpha-1B chain OS=Pan troglodytes GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.860e-16
Identity = 39/124 (31.45%), Postives = 69/124 (55.65%), Query Frame = -1
Query:  272 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 619
            +Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP          ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++
Sbjct:  311 KYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFVLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBA_TORMA (Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.959e-16
Identity = 39/124 (31.45%), Postives = 69/124 (55.65%), Query Frame = -1
Query:  272 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 619
            +Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP          ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++
Sbjct:  311 KYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBA_NOTVI (Tubulin alpha chain OS=Notophthalmus viridescens PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.959e-16
Identity = 39/124 (31.45%), Postives = 69/124 (55.65%), Query Frame = -1
Query:  272 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 619
            +Y+    ++RG +  K+V+  +  ++ K S  FV+W P   K  +   PP  +        + A   + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  +M  L  +Y++
Sbjct:  311 KYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEE 434          
The following BLAST results are available for this feature:
BLAST of DN617523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
TBA_EUPVA2.358e-1633.08Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1[more]
TBAD_PHYPO2.358e-1631.45Tubulin alpha-1A chain OS=Physarum polycephalum GN... [more]
TBA3_HOMAM2.358e-1631.30Tubulin alpha-3 chain OS=Homarus americanus PE=2 S... [more]
TBA2_PELFA2.358e-1630.53Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TU... [more]
TBA_XENLA3.079e-1631.30Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2... [more]
TBAN_PHYPO3.079e-1631.82Tubulin alpha-1B chain OS=Physarum polycephalum GN... [more]
TBAA_SCHCO4.021e-1628.24Tubulin alpha-1A chain OS=Schizophyllum commune GN... [more]
TBA1B_PANTR6.860e-1631.45Tubulin alpha-1B chain OS=Pan troglodytes GN=TUBA1... [more]
TBA_TORMA8.959e-1631.45Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1[more]
TBA_NOTVI8.959e-1631.45Tubulin alpha chain OS=Notophthalmus viridescens P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617523 ID=DN617523; Name=DN617523; organism=Citrus sinensis; type=EST; length=619bp
TATCTCTTTAACTACTTAATACAAACATACATCATTTATATTGAAACACA
TCATACCCATCCCCCAATACAACGAGACAAGTTACATACCAATAAACATC
ACATTCTAATGATCCCTCAACAACAGAAACAATAATCACAAACTGAAAGA
GCGCCGACAAGAAATAAATTTCAGACAAACTGGCCCTGGAACATTAGAAA
AAGACACCTCATGCTGCAACTTCCTCTTCTTCTTCCTCGTACTCCTCGTC
GTCAGCAGTTGCATCCTGATACTGCTGGTACTCTGCCACCAAGTCATTCA
TGTTACTCTCAGCCTCGGTGAACTCCATCTCGTCCATTCCCTCACCGGTG
TACCAGTGCAAGAAAGCTTTCCTCCGAAACATAGCCGTAAATTGCTCACT
GACTCGCCTAAACATCTCCTGAATTGACGTTGAATTTCCAATGAAAGTGG
ATGCCATTTTCAGACCCTTAGGCGGGATGTCACACACGCTCGACTTGACA
TTATTTGGTATCCACTCGACAAAGTACGAAGAGTTCTTGTTTTGGACATT
GATCATTTGTTCATCAACCTCTTTAGTACTCATCTTACCACGGAACATGG
CCGAAGCAGTTAGGTAACG
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