DN617523

Overview
NameDN617523
Unique NameDN617523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.882e-14
Identity = 39/124 (31.45%), Postives = 69/124 (55.65%), Query Frame = -1
Query:  272 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK---GLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 619
            +Y+    ++RG +  KEV+  +   ++++S  FV+W P   K  + + PP    G  +A        + N+T+I E + R+  +F  M+ ++AFLHWY  EGM+E EF EA  ++  L  +Y++
Sbjct:  318 KYMACCLLYRGDVVPKEVNAAIAATKSRHSVQFVDWCPTGFKVGINNRPPTVMPGGDLAKVHRSICMLSNTTAIVEAWARLDHKFDLMYAKRAFLHWYLREGMEEAEFLEAREDLAALERDYEE 441          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.916e-14
Identity = 36/124 (29.03%), Postives = 66/124 (53.23%), Query Frame = -1
Query:  272 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 619
            +Y+    ++ G +   +    + +++ K +  FV+W P   K  +C  PP  +          A   + N+T+I E +  +S +F  M+ ++AF+HWY GEGM+E EF+EA   +  L A+Y++
Sbjct:  311 KYMATCLLYGGDVVPNDAHAAVASLKTKRTIQFVDWCPTGFKLGICYQPPHQVPNGDLAKVNRAVCMLSNTTAIAEAWSALSSKFDLMYSKRAFVHWYVGEGMEEGEFSEAREVLAALEADYEE 434          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.916e-14
Identity = 40/131 (30.53%), Postives = 70/131 (53.44%), Query Frame = -1
Query:  251 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV---CDIPPKGLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD 619
            +Y+    ++RG +  K+V+  + +V+ K    FV+W P   K  +     I  +G  +A        + N+T+I E + R+  +F  M+ ++AF+HW+ GEGM+E EF EA  ++  L  +Y +    TAD
Sbjct:  314 KYMAVCLLYRGDVVPKDVNAAISSVKAKRGINFVDWCPTGFKVGINYQAPITVEGGDLAKVHRAVCMLSNTTAIAEAWARLDHKFDLMYSKRAFVHWFVGEGMEEGEFMEARDDLAALEKDYAEVSRDTAD 444          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.420e-14
Identity = 38/124 (30.65%), Postives = 68/124 (54.84%), Query Frame = -1
Query:  272 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 619
            +Y+    ++RG +  K+V+E +  ++++ S  FV+W P   K  +   PP          ++ A   + N+T+I E + R+  +F  M+ +KAFLHWY  EGM+  EF EA  ++  L  +Y++
Sbjct:  318 KYMACCLLYRGDVVPKDVNEAIAAMKSRTSVQFVDWCPTGFKVGINYQPPAVVPGGDLARVQRAVCMLSNTTAIVEAWARLDHKFDLMYAKKAFLHWYITEGMELGEFVEAREDLAALEKDYEE 441          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.420e-14
Identity = 38/124 (30.65%), Postives = 68/124 (54.84%), Query Frame = -1
Query:  272 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSV-----CDIPPKGLKMAST---FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 619
            +++    ++RG +  K+V+  +  +++K    FV+W P   K  +       +P   L   S     + N+T+I   F  +S +F  MF+++AF+HWY GEGM+E EFTEA  N+  L  ++++
Sbjct:  322 KFMACCMLYRGDVVPKDVNAAVSAIKSKRHIQFVDWCPTGFKIGINYEKPAFVPDGDLAKTSRACCMLSNTTAISVAFSNLSYKFDLMFKKRAFVHWYVGEGMEEGEFTEARENIAVLERDFEE 445          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 6.420e-14
Identity = 39/140 (27.86%), Postives = 71/140 (50.71%), Query Frame = -1
Query:  251 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMAS-------------TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ----YQDATAD 619
            +Y+  + ++RG +  ++    +  ++ K+S   VEW P   K  +    P  +  AS             + + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++    Y D   D
Sbjct:  312 KYMAVALLYRGDVVPRDTSAAVAALKAKSSFNLVEWCPTGFKIGINHQKPMSVPTASPADGGLASVDRSVSMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLASLEKDYEEVAGDYNDVDVD 451          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBAA_PNECA (Tubulin alpha chain (Fragment) OS=Pneumocystis carinii GN=TUB-A PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.385e-14
Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = -1
Query:  329 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLK--------MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDE 619
            +Y+    ++RG + TK+V+  +  V+ K +  FV+W P   K  VC  PP+ +          A   + N+TSI E + R+  +F  M+ ++AF+HWY GEGM+E
Sbjct:  108 KYMATCLLYRGDVVTKDVNAAVAAVRTKRTIQFVDWCPTGFKLGVCYQPPQHVPHGDLAKVDRAVCMLSNTTSIAEAWPRLDHKFDLMYSKRAFVHWYVGEGMEE 212          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.868e-13
Identity = 36/124 (29.03%), Postives = 65/124 (52.42%), Query Frame = -1
Query:  272 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 619
            +Y+    ++RG +  K+V+  +  ++   S  FV+W P   K  +   PP          ++ A   + N+T+I E + R+  +F  M+ ++AF+HWY  EGM+E EF EA  ++  L  +Y +
Sbjct:  308 KYMACCMLYRGDVVPKDVNVAIAAIKTNRSLQFVDWCPTGFKVGINYQPPIPTPGGDLAQVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVSEGMEEGEFAEAREDLAALEKDYDE 431          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.440e-13
Identity = 35/124 (28.23%), Postives = 65/124 (52.42%), Query Frame = -1
Query:  272 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 619
            +Y+    ++RG +   +    +  ++ K +  FV+W P   K  +C   P+ +          A   + N+T+I E +  +S +F  M  ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct:  311 KYMATCLLYRGDVVPNDAHAAVATLKTKRTIQFVDWCPTGFKLGICYQAPENVPNGDLAKVSRAVCMLSNTTAIAEAWSSLSLKFDLMHSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBA3E_HUMAN (Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.186e-13
Identity = 36/124 (29.03%), Postives = 67/124 (54.03%), Query Frame = -1
Query:  272 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 619
            +Y+    ++RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   + N+T+I E + R+  +F  M+ + AF+HWY GEGM+E EF+EA  ++  L  + ++
Sbjct:  311 KYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLVHKFDLMYAKWAFVHWYVGEGMEEGEFSEAREDLAALEKDCEE 434          
The following BLAST results are available for this feature:
BLAST of DN617523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
TBAL3_HUMAN2.882e-1431.45Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBA_SORMA4.916e-1429.03Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBA8_CAEEL4.916e-1430.53Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]
TBAL3_MOUSE6.420e-1430.65Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]
TBA4_DROME6.420e-1430.65Tubulin alpha-4 chain OS=Drosophila melanogaster G... [more]
TBA1_NEUCR6.420e-1427.86Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]
TBAA_PNECA8.385e-1434.29Tubulin alpha chain (Fragment) OS=Pneumocystis car... [more]
TBA2_CHICK1.868e-1329.03Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA_GIBZE2.440e-1328.23Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA3E_HUMAN3.186e-1329.03Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617523 ID=DN617523; Name=DN617523; organism=Citrus sinensis; type=EST; length=619bp
TATCTCTTTAACTACTTAATACAAACATACATCATTTATATTGAAACACA
TCATACCCATCCCCCAATACAACGAGACAAGTTACATACCAATAAACATC
ACATTCTAATGATCCCTCAACAACAGAAACAATAATCACAAACTGAAAGA
GCGCCGACAAGAAATAAATTTCAGACAAACTGGCCCTGGAACATTAGAAA
AAGACACCTCATGCTGCAACTTCCTCTTCTTCTTCCTCGTACTCCTCGTC
GTCAGCAGTTGCATCCTGATACTGCTGGTACTCTGCCACCAAGTCATTCA
TGTTACTCTCAGCCTCGGTGAACTCCATCTCGTCCATTCCCTCACCGGTG
TACCAGTGCAAGAAAGCTTTCCTCCGAAACATAGCCGTAAATTGCTCACT
GACTCGCCTAAACATCTCCTGAATTGACGTTGAATTTCCAATGAAAGTGG
ATGCCATTTTCAGACCCTTAGGCGGGATGTCACACACGCTCGACTTGACA
TTATTTGGTATCCACTCGACAAAGTACGAAGAGTTCTTGTTTTGGACATT
GATCATTTGTTCATCAACCTCTTTAGTACTCATCTTACCACGGAACATGG
CCGAAGCAGTTAGGTAACG
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