DN617523

Overview
NameDN617523
Unique NameDN617523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBA6_NAEGR (Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.435e-13
Identity = 37/124 (29.84%), Postives = 70/124 (56.45%), Query Frame = -1
Query:  272 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGL--------KMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQ 619
            +Y+ +  M+RG +  KEV + + NV++K +  FV+W P   K  V    P  L        + +   I N+T+I ++F R++++F  ++ ++A++H +  EGM+E EF EA  ++  L  +Y +
Sbjct:  309 KYIASCLMYRGDVVNKEVTDAVKNVKSKANIQFVDWSPCAFKIGVNSQKPTVLPDSEFAQVERSCAMISNNTAISQVFERMNDKFDLLYAKRAYVHHFVSEGMEEGEFAEAREDLAALEKDYTE 432          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.099e-13
Identity = 42/121 (34.71%), Postives = 67/121 (55.37%), Query Frame = -1
Query:  257 YLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLVAEYQQYQDAT 616
            YL  + M RG +   ++   +  +  K S  FV W     K+S+C +PP G   +   + N+T ++  F  + E+F  ++++KA LH Y   EGM+E  FTEA S+++ L+ EY Q  DAT
Sbjct:  343 YLACALMVRGNVQISDLRRNIERL--KPSLQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSLSALIQEYDQL-DAT 460          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.099e-13
Identity = 37/131 (28.24%), Postives = 71/131 (54.20%), Query Frame = -1
Query:  251 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPK---GLKMAS-----TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD 619
            +Y+  + ++RG    ++  + + +++ K S   VEW P   K  +    P    G ++A      + + N+T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++    + D
Sbjct:  313 KYMAVALLYRGDCVPRDCTQAIASLKAKASFNLVEWCPTGFKVGINYQKPARVPGSELAPVDRSVSMLSNTTAISEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVAGDSLD 443          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBA_DICPU (Tubulin alpha chain (Fragment) OS=Dictyostelium purpureum GN=tuba PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.065e-12
Identity = 37/112 (33.04%), Postives = 62/112 (55.36%), Query Frame = -1
Query:  323 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSY--FVEWIPNNVKSSVCDIPP------KGLKMAST-----FIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME 619
            +Y+    M+RG +  KE  + + N++N+ S    FV+W P   K  + +  P       G  MA T      + N+T+I ++F R++ +F  M+ ++AF+HWY GEGM+E E
Sbjct:  220 KYMACCLMYRGNIVPKEAQKAVQNIRNEKSKTVSFVDWSPTGFKCGINNSKPTTVLGENGDNMARTEKSVCMLSNTTAISQVFSRINHKFDLMYIKRAFVHWYVGEGMEEGE 331          
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.601e-12
Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = -1
Query:  257 YLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG-EGMDEMEFTEAESNMNDLVAEYQQYQDAT 616
            YL  + + RG +   ++   +  +  K +  FV W     K+S+C +PP G   +   + N+T ++  F  + E+FT ++++KA LH Y   +GM+E  FTEA S+++ L+ EY    DAT
Sbjct:  343 YLACALIVRGNVQISDLRRNIERL--KPALQFVSWNQEGWKTSLCSVPPVGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSALIQEYSDL-DAT 460          
The following BLAST results are available for this feature:
BLAST of DN617523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
TBA6_NAEGR5.435e-1329.84Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA... [more]
TBE_HUMAN7.099e-1334.71Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBA2_EMENI7.099e-1328.24Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBA_DICPU2.065e-1233.04Tubulin alpha chain (Fragment) OS=Dictyostelium pu... [more]
TBE_MOUSE4.601e-1232.23Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617523 ID=DN617523; Name=DN617523; organism=Citrus sinensis; type=EST; length=619bp
TATCTCTTTAACTACTTAATACAAACATACATCATTTATATTGAAACACA
TCATACCCATCCCCCAATACAACGAGACAAGTTACATACCAATAAACATC
ACATTCTAATGATCCCTCAACAACAGAAACAATAATCACAAACTGAAAGA
GCGCCGACAAGAAATAAATTTCAGACAAACTGGCCCTGGAACATTAGAAA
AAGACACCTCATGCTGCAACTTCCTCTTCTTCTTCCTCGTACTCCTCGTC
GTCAGCAGTTGCATCCTGATACTGCTGGTACTCTGCCACCAAGTCATTCA
TGTTACTCTCAGCCTCGGTGAACTCCATCTCGTCCATTCCCTCACCGGTG
TACCAGTGCAAGAAAGCTTTCCTCCGAAACATAGCCGTAAATTGCTCACT
GACTCGCCTAAACATCTCCTGAATTGACGTTGAATTTCCAATGAAAGTGG
ATGCCATTTTCAGACCCTTAGGCGGGATGTCACACACGCTCGACTTGACA
TTATTTGGTATCCACTCGACAAAGTACGAAGAGTTCTTGTTTTGGACATT
GATCATTTGTTCATCAACCTCTTTAGTACTCATCTTACCACGGAACATGG
CCGAAGCAGTTAGGTAACG
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