DN617523

Overview
NameDN617523
Unique NameDN617523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2333 contig Csv1_Contig2333:96..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB8_ORYSJ (Tubulin beta-8 chain OS=Oryza sativa subsp. japonica GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 5.180e-64
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLTASAMFRG+MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLVAEYQQYQDATA+D
Sbjct:  309 RYLTASAMFRGRMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVAEYQQYQDATAED 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB_CICAR (Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 6.765e-64
Identity = 118/124 (95.16%), Postives = 122/124 (98.39%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLTASAMFRGKMSTKEVDEQ+INVQNKNSSYFVEWIPNNVKSSVCDIPPK LKM+STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDA A++
Sbjct:  311 RYLTASAMFRGKMSTKEVDEQIINVQNKNSSYFVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDAIAEE 434
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB2_PEA (Tubulin beta-2 chain (Fragment) OS=Pisum sativum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 6.765e-64
Identity = 117/124 (94.35%), Postives = 123/124 (99.19%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLTASA+FRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  307 RYLTASAIFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 430
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB4_MAIZE (Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 8.835e-64
Identity = 118/124 (95.16%), Postives = 121/124 (97.58%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT EGMDEMEFTEAESNMNDLVAEYQQYQDATA++
Sbjct:  311 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLPMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVAEYQQYQDATAEE 434
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB_NAEGR (Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.154e-63
Identity = 114/124 (91.94%), Postives = 124/124 (100.00%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLTASAMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPP+GLKMA+TFIGNST+IQEMF+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  309 RYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPRGLKMAATFIGNSTAIQEMFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB_EUPFO (Tubulin beta chain OS=Euplotes focardii PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.154e-63
Identity = 114/124 (91.94%), Postives = 124/124 (100.00%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLTASAMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPPKGLKM+STFIGNST+IQEMF+RV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  309 RYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSSTFIGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB_EUPCR (Tubulin beta chain OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.154e-63
Identity = 114/124 (91.94%), Postives = 124/124 (100.00%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLTASAMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPPKGLK+ASTFIGNST+IQEMF+RV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  309 RYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKLASTFIGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB1_PHYPO (Tubulin beta-1 chain OS=Physarum polycephalum GN=BETA PE=1 SV=4)

HSP 1 Score: 242.662 bits (618), Expect = 1.154e-63
Identity = 115/124 (92.74%), Postives = 122/124 (98.39%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLTASAMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPPKGLKMA TFIGNST+IQE+F+RVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDAT DD
Sbjct:  309 RYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMAVTFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATIDD 432
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB1_ANEPH (Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.154e-63
Identity = 118/123 (95.93%), Postives = 121/123 (98.37%), Query Frame = -1 
Query:  251 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATAD 619
            RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GLKMA TFIGNSTSIQEMFRRVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA+
Sbjct:  309 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLKMAVTFIGNSTSIQEMFRRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAE 431
[Close]
BLAST of DN617523 vs. ExPASy Swiss-Prot
Match: TBB_EUPOC (Tubulin beta chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.507e-63
Identity = 113/124 (91.13%), Postives = 124/124 (100.00%), Query Frame = -1 
Query:  248 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADD 619
            RYLTASAMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPPKGLKM+STF+GNST+IQEMF+RV+EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++
Sbjct:  309 RYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSSTFVGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEE 432
The following BLAST results are available for this feature:
BLAST of DN617523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
TBB8_ORYSJ5.180e-6495.16Tubulin beta-8 chain OS=Oryza sativa subsp. japoni... [more]
TBB_CICAR6.765e-6495.16Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2... [more]
TBB2_PEA6.765e-6494.35Tubulin beta-2 chain (Fragment) OS=Pisum sativum G... [more]
TBB4_MAIZE8.835e-6495.16Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=... [more]
TBB_NAEGR1.154e-6391.94Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1[more]
TBB_EUPFO1.154e-6391.94Tubulin beta chain OS=Euplotes focardii PE=3 SV=1[more]
TBB_EUPCR1.154e-6391.94Tubulin beta chain OS=Euplotes crassus PE=3 SV=1[more]
TBB1_PHYPO1.154e-6392.74Tubulin beta-1 chain OS=Physarum polycephalum GN=B... [more]
TBB1_ANEPH1.154e-6395.93Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB... [more]
TBB_EUPOC1.507e-6391.13Tubulin beta chain OS=Euplotes octocarinatus PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617523 ID=DN617523; Name=DN617523; organism=Citrus sinensis; type=EST; length=619bp
TATCTCTTTAACTACTTAATACAAACATACATCATTTATATTGAAACACA
TCATACCCATCCCCCAATACAACGAGACAAGTTACATACCAATAAACATC
ACATTCTAATGATCCCTCAACAACAGAAACAATAATCACAAACTGAAAGA
GCGCCGACAAGAAATAAATTTCAGACAAACTGGCCCTGGAACATTAGAAA
AAGACACCTCATGCTGCAACTTCCTCTTCTTCTTCCTCGTACTCCTCGTC
GTCAGCAGTTGCATCCTGATACTGCTGGTACTCTGCCACCAAGTCATTCA
TGTTACTCTCAGCCTCGGTGAACTCCATCTCGTCCATTCCCTCACCGGTG
TACCAGTGCAAGAAAGCTTTCCTCCGAAACATAGCCGTAAATTGCTCACT
GACTCGCCTAAACATCTCCTGAATTGACGTTGAATTTCCAATGAAAGTGG
ATGCCATTTTCAGACCCTTAGGCGGGATGTCACACACGCTCGACTTGACA
TTATTTGGTATCCACTCGACAAAGTACGAAGAGTTCTTGTTTTGGACATT
GATCATTTGTTCATCAACCTCTTTAGTACTCATCTTACCACGGAACATGG
CCGAAGCAGTTAGGTAACG
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