DN617516

Overview
NameDN617516
Unique NameDN617516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617516 vs. ExPASy Swiss-Prot
Match: YPEL3_DANRE (Proteim yippee-like 3 OS=Danio rerio GN=ypel3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.983e-23
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 2
Query:  203 YSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKY 442
            YSC HCR HLA  +D++SKSF    G+AYLF+ VVNV  G  EERL++TG+H VADI+C  C + +GWKYE A E SQKY
Sbjct:   21 YSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERLLLTGLHAVADIYCENCHTTLGWKYEQAFELSQKY 100          
BLAST of DN617516 vs. ExPASy Swiss-Prot
Match: YPEL3_MOUSE (Protein yippee-like 3 OS=Mus musculus GN=Ypel3 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.770e-23
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 2
Query:  203 YSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKY 442
            YSC HCR HLA  +D++SKSF    G+AYLF+ VVNV  G  EER+++TG+H VADI C  C + +GWKYE A E SQKY
Sbjct:   21 YSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIHCENCKTTLGWKYEQAFESSQKY 100          
BLAST of DN617516 vs. ExPASy Swiss-Prot
Match: YPEL3_HUMAN (Protein yippee-like 3 OS=Homo sapiens GN=YPEL3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.770e-23
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 2
Query:  203 YSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKY 442
            YSC HCR HLA  +D++SKSF    G+AYLF+ VVNV  G  EER+++TG+H VADI C  C + +GWKYE A E SQKY
Sbjct:   21 YSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIHCENCKTTLGWKYEQAFESSQKY 100          
BLAST of DN617516 vs. ExPASy Swiss-Prot
Match: YPEL3_CERAE (Protein yippee-like 3 OS=Cercopithecus aethiops GN=YPEL3 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.770e-23
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 2
Query:  203 YSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKY 442
            YSC HCR HLA  +D++SKSF    G+AYLF+ VVNV  G  EER+++TG+H VADI C  C + +GWKYE A E SQKY
Sbjct:   21 YSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIHCENCKTTLGWKYEQAFESSQKY 100          
BLAST of DN617516 vs. ExPASy Swiss-Prot
Match: YPEL3_BOVIN (Protein yippee-like 3 OS=Bos taurus GN=YPEL3 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.770e-23
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 2
Query:  203 YSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKY 442
            YSC HCR HLA  +D++SKSF    G+AYLF+ VVNV  G  EER+++TG+H VADI C  C + +GWKYE A E SQKY
Sbjct:   21 YSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIHCENCKTTLGWKYEQAFESSQKY 100          
BLAST of DN617516 vs. ExPASy Swiss-Prot
Match: YIPL6_ARATH (Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 5.770e-23
Identity = 45/82 (54.88%), Postives = 63/82 (76.83%), Query Frame = 2
Query:  197 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKY 442
            ++YSC +CR H+ L +D++SK+F  R G+A+LFS  +N+ VG KE+R ++TG+HTVADI CV C   +GWKYE A+E SQKY
Sbjct:    8 RLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGLHTVADISCVDCNEPLGWKYERAYETSQKY 89          
BLAST of DN617516 vs. ExPASy Swiss-Prot
Match: YPL1_DROME (Protein yippee-like CG15309 OS=Drosophila melanogaster GN=CG15309 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 7.536e-23
Identity = 46/82 (56.10%), Postives = 62/82 (75.61%), Query Frame = 2
Query:  197 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKY 442
            + YSC HCR HLA  ++++SKSF    G AYLF+ VVNV+ G+ EER+++TG+H VADI+C  C + +GWKYE A+E SQKY
Sbjct:   14 RTYSCVHCRAHLASHDELISKSFQGSQGPAYLFNSVVNVACGQTEERVLLTGLHAVADIYCECCKTPLGWKYEHAYESSQKY 95          
BLAST of DN617516 vs. ExPASy Swiss-Prot
Match: YPEL2_PONAB (Protein yippee-like 2 OS=Pongo abelii GN=YPEL2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 9.843e-23
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 2
Query:  197 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKY 442
            + YSC HCR HLA  ++++SKSF    G+AYLF+ VVNV  G  EER+++TG+H VADI+C  C + +GWKYE A E SQKY
Sbjct:   19 RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKY 100          
BLAST of DN617516 vs. ExPASy Swiss-Prot
Match: YPEL2_MOUSE (Protein yippee-like 2 OS=Mus musculus GN=Ypel2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 9.843e-23
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 2
Query:  197 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKY 442
            + YSC HCR HLA  ++++SKSF    G+AYLF+ VVNV  G  EER+++TG+H VADI+C  C + +GWKYE A E SQKY
Sbjct:   19 RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKY 100          
BLAST of DN617516 vs. ExPASy Swiss-Prot
Match: YPEL2_HUMAN (Protein yippee-like 2 OS=Homo sapiens GN=YPEL2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 9.843e-23
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 2
Query:  197 KIYSCKHCRTHLALCEDVVSKSFHCRHGKAYLFSKVVNVSVGEKEERLMMTGMHTVADIFCVGCGSIVGWKYETAHEKSQKY 442
            + YSC HCR HLA  ++++SKSF    G+AYLF+ VVNV  G  EER+++TG+H VADI+C  C + +GWKYE A E SQKY
Sbjct:   19 RTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKY 100          
The following BLAST results are available for this feature:
BLAST of DN617516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
YPEL3_DANRE1.983e-2360.00Proteim yippee-like 3 OS=Danio rerio GN=ypel3 PE=2... [more]
YPEL3_MOUSE5.770e-2358.75Protein yippee-like 3 OS=Mus musculus GN=Ypel3 PE=... [more]
YPEL3_HUMAN5.770e-2358.75Protein yippee-like 3 OS=Homo sapiens GN=YPEL3 PE=... [more]
YPEL3_CERAE5.770e-2358.75Protein yippee-like 3 OS=Cercopithecus aethiops GN... [more]
YPEL3_BOVIN5.770e-2358.75Protein yippee-like 3 OS=Bos taurus GN=YPEL3 PE=3 ... [more]
YIPL6_ARATH5.770e-2354.88Protein yippee-like At4g27745 OS=Arabidopsis thali... [more]
YPL1_DROME7.536e-2356.10Protein yippee-like CG15309 OS=Drosophila melanoga... [more]
YPEL2_PONAB9.843e-2356.10Protein yippee-like 2 OS=Pongo abelii GN=YPEL2 PE=... [more]
YPEL2_MOUSE9.843e-2356.10Protein yippee-like 2 OS=Mus musculus GN=Ypel2 PE=... [more]
YPEL2_HUMAN9.843e-2356.10Protein yippee-like 2 OS=Homo sapiens GN=YPEL2 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01E24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617516 ID=DN617516; Name=DN617516; organism=Citrus sinensis; type=EST; length=444bp
CTTTCTCAAGCATCTCCCTTTTATTAAATTTTCTTTATTTTCAAGTAATT
TTCTTTTTGTTTGTTTTCAATGATTCATTCAACCACCACCGTCTTGTTTG
ATTTTTGATTTTGTGTGTATTTTTTTCCTGCAAAGATCTGTTGGTAGAGT
AGTGTGAAGAATTATGGGGAGGCTATTTGTGGTGAATCTTGAAGGGAAGA
TCTATAGCTGCAAGCACTGCAGGACCCATCTTGCTTTATGTGAAGACGTC
GTCTCTAAGTCTTTCCATTGCAGGCATGGGAAAGCTTATCTCTTCAGTAA
GGTTGTGAATGTTTCTGTTGGAGAGAAAGAGGAGAGATTGATGATGACTG
GGATGCATACAGTGGCTGACATTTTCTGTGTTGGGTGTGGATCAATTGTC
GGTTGGAAATACGAGACTGCCCATGAAAAGAGCCAAAAGTACAA
back to top