DN617514

Overview
NameDN617514
Unique NameDN617514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 3.591e-35
Identity = 68/91 (74.73%), Postives = 80/91 (87.91%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+PC K GGIRFT+NG+ YF+LVLITNVGGAGD+ +VS+KGSKT  WQ+MSRNWGQNWQSN+YL GQSLSFQ+T SDGRTV S +VVP +W
Sbjct:  154 RVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDW 244          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.040e-34
Identity = 63/90 (70.00%), Postives = 76/90 (84.44%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+PC K+GGIRFT+NGH YFNLVLITNV GAGD+   S+KGS+TGW ++SRNWGQNWQSN+ L GQ+LSF++T SD RT TS N+VP NW
Sbjct:  155 RVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNW 244          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 3.971e-34
Identity = 61/90 (67.78%), Postives = 77/90 (85.56%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+PCAK+GG+RFT+NG  YF LVL++NVGG G + SVSIKGS+TGW AMSRNWG NWQSN+YL+GQSLSF++T+SDG+T+T  +V P  W
Sbjct:  159 RVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSVSIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGW 248          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.155e-33
Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            RIPC KKGGIRFT+NG  YFNLVL+TNV GAGDV  VS+KGS T W  +SRNWGQNWQSN+ L GQSLSF++  SDGR+ TSNN+ P NW
Sbjct:  156 RIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNW 245          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.509e-33
Identity = 62/91 (68.13%), Postives = 77/91 (84.62%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+ C KKGGIRFT+NGHSYFNLVL+TNVGGAGDVH+V++K  ++  WQA+SRNWGQNWQS + L+GQ+LSF++T  DGR+V SNN VP  W
Sbjct:  189 RVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGW 279          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.971e-33
Identity = 62/90 (68.89%), Postives = 74/90 (82.22%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+ C K GGIRFT+NGH YFNLVLITNV GAGD+   S+KGSKTGW +++RNWGQNWQSN+ L GQSLSF++T+SD RT TS N+ P NW
Sbjct:  158 RVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNW 247          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.574e-33
Identity = 62/96 (64.58%), Postives = 80/96 (83.33%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG------WQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+ CA+KGG+RFTVNGH+YFNLVL+TNVGGAGDV S+++KGS +G      WQ MSRNWGQNWQSN+YL+G++LSF++TA DGR++T  +V P  W
Sbjct:  153 RVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTCADVAPAGW 248          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.277e-32
Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+PC K GGIRFTVNG  YFNLVL+TNV GAGD++ VS+KGSKT W  MSRNWGQNWQSN+ L GQSLSF++TASD R+ TS NV P  W
Sbjct:  160 RVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATW 249          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.854e-32
Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+PC KKGG+RFT+NG  YFNLVLITNV GAGD+   S+KG+ TGW  MSRNWGQNWQSNS L GQ+LSF++T SD RT TS N  P  W
Sbjct:  162 RVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGW 251          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 4.109e-31
Identity = 58/90 (64.44%), Postives = 72/90 (80.00%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+PC K+GGIRFT+NG  YFNLVL+TNV GAG++  + +KG+ T W  MSRNWGQNWQSNS L GQSLSF++T+SD R+ TS N+ P NW
Sbjct:  155 RVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANW 244          
The following BLAST results are available for this feature:
BLAST of DN617514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA2_ARATH3.591e-3574.73Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA4_ARATH3.040e-3470.00Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA1_ORYSJ3.971e-3467.78Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA9_ARATH1.155e-3371.11Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA5_ORYSJ1.509e-3368.13Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP16_ARATH1.971e-3368.89Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA6_ORYSJ2.574e-3364.58Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ARATH1.277e-3271.11Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA7_ORYSJ4.854e-3267.78Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ARATH4.109e-3164.44Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01E23_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617514 ID=DN617514; Name=DN617514; organism=Citrus sinensis; type=EST; length=528bp
TGAAATTATACCCGTTCATTCAATTGAAGTAATAACTATATATAGAACAC
AATCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAGACCACCACAGC
AACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACCTACCCCTATTCT
CACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTAAATATACAAATT
CTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTCAAAGGTTTGCCC
AAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCACAGTCCTGCCGT
CACTGGCTGTCAATTGGAAAGAAAGACTTTGGCCGTTAAGATAAGAATTG
CTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCCATCCAGTCTT
TGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCCTCCGACATTTG
TGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGGTAAACCTTATT
CCTCCTTTCTTCGCACACGGGATCCTTC
back to top