DN617514

Overview
NameDN617514
Unique NameDN617514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:104..631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.109e-31
Identity = 59/93 (63.44%), Postives = 74/93 (79.57%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIK---GSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+ C +KGG+RFT+NGHSYFNLVL++NVGGAGDVH+V++K   G K  WQAM+RNWGQNWQS + L+GQ+LSF +T  D R+V S NV P  W
Sbjct:  160 RVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQSGALLDGQALSFTVTTGDRRSVVSYNVAPAGW 252          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 5.367e-31
Identity = 59/90 (65.56%), Postives = 69/90 (76.67%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+PC + GGIRF ++GH YF LV +TNVGG+G V  +SIKGS TGW AMSRNWG NWQSN+YL GQSLSF +   DGR VT+ NV P NW
Sbjct:  153 RVPCQRSGGIRFAISGHDYFELVTVTNVGGSGVVAQMSIKGSNTGWMAMSRNWGANWQSNAYLAGQSLSFIVQLDDGRKVTAWNVAPSNW 242          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.367e-31
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+ C KKGG+RF +NG  YF LV I NVGGAG + SVSIKGSKTGW AMSRNWG NWQSN+YL+GQ+LSF +T +DG T    NVVP +W
Sbjct:  151 RVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSW 240          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.009e-31
Identity = 59/90 (65.56%), Postives = 71/90 (78.89%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+PC + GGIRF VNGHSYF LVL+TNVGG+G V  + IKGS TGW AMSRNWG NWQSN+ L+GQ+LSF++ A DGR VT+ +V P  W
Sbjct:  149 RVPCQRSGGIRFAVNGHSYFELVLVTNVGGSGAVAQMWIKGSGTGWMAMSRNWGANWQSNARLDGQALSFRVQADDGRVVTAADVAPAGW 238          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.009e-31
Identity = 55/90 (61.11%), Postives = 72/90 (80.00%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+ C +KGG+RFT+NG+SYF LVLITNVGG G + SV IKG+KTGW  MSRNWG NWQ+N+YLN Q++SF +T++ G+T+   +V P NW
Sbjct:  148 RVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKGTKTGWVTMSRNWGANWQANNYLNNQAISFSVTSTAGKTLVFEDVAPSNW 237          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.663e-30
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+PC K GGIRFT++G  YF LV + NVGG+G V  VSIKGSKT W AMSRNWGQNWQSN+YLN QSLSF++   D R VT  N+ P NW
Sbjct:  147 RVPCQKSGGIRFTISGRDYFELVTVFNVGGSGVVAQVSIKGSKTDWMAMSRNWGQNWQSNAYLNTQSLSFKVKLDDAREVTVWNIAPSNW 236          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.110e-27
Identity = 53/92 (57.61%), Postives = 70/92 (76.09%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK--TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+PC ++GG+RFTV G  YF LVL+TNV  AG V S+ ++GS+   GW AMSRNWG NWQS +YL+GQ LSF++TA+DG+T+    VVP +W
Sbjct:  159 RVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVRGSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTIVFAGVVPPSW 250          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 2.756e-27
Identity = 53/91 (58.24%), Postives = 65/91 (71.43%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGS-KTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+PC KKGG+RFT+NGH YFNLVL+TNV   G + S+ I GS  T W  M RNWG NW S SYL GQ+LSF++T  DG+T+   N+VP  W
Sbjct:  159 RVPCIKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGW 249          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 3.600e-27
Identity = 53/91 (58.24%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGS-KTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+PC KKGG+RFT+NGH YFNLVL+TNV   G + S+ I GS  T W  M RNWG NW S SYL GQ LSF++T  DG+T+   N+VP  W
Sbjct:  175 RVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGW 265          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 6.140e-27
Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R PC + GGIRF + GH Y+ LVL+TNV G+G V +  +KGS T W +MSRNWG+NWQSN+YL GQ+LSF++ A DG  VT+ +V P NW
Sbjct:  151 RTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFRVQADDGGVVTAYDVAPANW 240          
The following BLAST results are available for this feature:
BLAST of DN617514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP21_ORYSJ4.109e-3163.44Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA3_ORYSJ5.367e-3165.56Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP11_ARATH5.367e-3166.67Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXPA8_ORYSJ7.009e-3165.56Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP12_ORYSJ7.009e-3161.11Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP33_ORYSJ2.663e-3065.56Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ2.110e-2757.61Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ2.756e-2758.24Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ3.600e-2758.24Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ6.140e-2757.78Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E23_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617514 ID=DN617514; Name=DN617514; organism=Citrus sinensis; type=EST; length=528bp
TGAAATTATACCCGTTCATTCAATTGAAGTAATAACTATATATAGAACAC
AATCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAGACCACCACAGC
AACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACCTACCCCTATTCT
CACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTAAATATACAAATT
CTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTCAAAGGTTTGCCC
AAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCACAGTCCTGCCGT
CACTGGCTGTCAATTGGAAAGAAAGACTTTGGCCGTTAAGATAAGAATTG
CTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCCATCCAGTCTT
TGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCCTCCGACATTTG
TGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGGTAAACCTTATT
CCTCCTTTCTTCGCACACGGGATCCTTC
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