DN617514

Overview
NameDN617514
Unique NameDN617514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:104..631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.044e-22
Identity = 46/91 (50.55%), Postives = 68/91 (74.73%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTA-SDGRTVTSNNVVPGNW 526
            R+PC + GG+RF   G+SY+ L+ + NVGGAGD+ S+++KGS+T W +MS NWG ++Q+ S L GQSLSF++T+ + G T+ + NV P NW
Sbjct:  159 RVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANW 249          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 4.554e-22
Identity = 49/90 (54.44%), Postives = 63/90 (70.00%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+ C ++GG+RFTV G +YF LVLITNV G+G V S  IKG+ TGW  MSRNWG NWQS + L GQ+LSF +T + G+ +   +V P  W
Sbjct:  153 RVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPAWW 242          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 5.947e-22
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+ C ++GG+RFTV G  +F LVL+ NV G+G V +VS++G+ TGW  MSRNWG NWQS + L GQ LSF +T + G+ +   +V P  W
Sbjct:  152 RVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGW 241          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.035e-21
Identity = 45/90 (50.00%), Postives = 63/90 (70.00%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+ C ++GG+RF+++G S+F  VLI+NVG  G+V  V +KG  T W  M+RNWGQNW S+  L GQSLSF++T   G+T+ S +V P  W
Sbjct:  154 RVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYW 243          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.913e-20
Identity = 44/90 (48.89%), Postives = 61/90 (67.78%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            R+PCAK GG++F + G+ +F ++L  NVGGAG V ++ IKG++T W AM +NWGQ W +   L GQ LSF+LT SDG      +V P +W
Sbjct:  210 RVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDW 299          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.240e-19
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGR-TVTSNNVVPGNW 526
            R+ C K GGIRF   G+ Y+ LV + NVGG GD+ ++++KGS+TGW  MS NWG ++Q+ S L GQSLSF+LT+   R T+ + N  P +W
Sbjct:  154 RVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASW 244          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.054e-18
Identity = 37/91 (40.66%), Postives = 63/91 (69.23%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 526
            ++ C ++GGI++T+ G+  +N+V++ NVGGAGDV  +++KG+K   W  + R+WGQ W++ + L G+SL+F++   D R  TS  V P +W
Sbjct:  188 KVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDW 278          
BLAST of DN617514 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.760e-17
Identity = 40/92 (43.48%), Postives = 62/92 (67.39%), Query Frame = -3
Query:  257 RIPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIK-GSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTA-SDGRTVTSNNVVPGNW 526
            R+PCA+ GG+RF + G+ Y+ L  + NV GAGDV  + +K G   GW  MS NWG ++Q+ + L GQ+LSF++T+ + G+T+ +  V P +W
Sbjct:  162 RVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASW 253          
The following BLAST results are available for this feature:
BLAST of DN617514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA7_ARATH2.044e-2250.55Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP31_ORYSJ4.554e-2254.44Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ5.947e-2250.00Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP20_ARATH5.035e-2150.00Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP24_ARATH1.913e-2048.89Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP18_ARATH1.240e-1949.45Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP26_ORYSJ3.054e-1840.66Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP30_ORYSJ5.760e-1743.48Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E23_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617514 ID=DN617514; Name=DN617514; organism=Citrus sinensis; type=EST; length=528bp
TGAAATTATACCCGTTCATTCAATTGAAGTAATAACTATATATAGAACAC
AATCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAGACCACCACAGC
AACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACCTACCCCTATTCT
CACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTAAATATACAAATT
CTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTCAAAGGTTTGCCC
AAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCACAGTCCTGCCGT
CACTGGCTGTCAATTGGAAAGAAAGACTTTGGCCGTTAAGATAAGAATTG
CTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCCATCCAGTCTT
TGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCCTCCGACATTTG
TGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGGTAAACCTTATT
CCTCCTTTCTTCGCACACGGGATCCTTC
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