DN617513

Overview
NameDN617513
Unique NameDN617513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12590 contig Csv1_Contig12590:50..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 2.587e-50
Identity = 86/146 (58.90%), Postives = 106/146 (72.60%), Query Frame = 2
Query:  125 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN 553
            WQ  HATFY              YG+LYSQGYGT  AALSTALFN+G SCG CY++ C+    P+WC PG ++ +TATNFCPPN  L +DNGGWCNPP  HFDMA+PA+ +I  Y AGI+P+ ++R+PC KKGG+RFT+NGH YFN
Sbjct:   34 WQKAHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQRVPCIKKGGVRFTINGHDYFN 179          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 5.764e-50
Identity = 86/146 (58.90%), Postives = 106/146 (72.60%), Query Frame = 2
Query:  122 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            GW   HATFY              YGNLY+QGYGT TAALSTALFN+GL+CG CY++ C+   D  WC PG S+ +TATNFCPPN  L +D+GGWCNPP  HFDMA+PA+ +I  YR GI+P+ ++R+PC KKGG+RFT+NGH YF
Sbjct:   33 GWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYF 178          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 1.677e-49
Identity = 86/146 (58.90%), Postives = 105/146 (71.92%), Query Frame = 2
Query:  125 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN 553
            W   HATFY              Y +LYSQGYGT  AALSTALFN+G SCG CY++ C+    P+WC PG ++ VTATNFCPPN  L +DNGGWCNPP  HFDMA+PA+ +I  YRAGI+P+ ++R+PC KKGG+RFT+NGH YFN
Sbjct:   50 WLKAHATFYGGADASGTMGGACGYVDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQRVPCVKKGGVRFTINGHDYFN 195          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 2.861e-49
Identity = 87/146 (59.59%), Postives = 107/146 (73.29%), Query Frame = 2
Query:  122 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            GW   HATFY              YGNLY+ GY TNTAALSTALFN+G SCG CY++ C+    P+WCL G SI +TATNFCPPN A ++DNGGWCNPP  HFDMA+PAFL IA+Y+AGIVPI ++++ C + GG+RFT+NG +YF
Sbjct:   27 GWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYF 172          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 3.736e-49
Identity = 85/146 (58.22%), Postives = 109/146 (74.66%), Query Frame = 2
Query:  122 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            GW SG ATFY              YGNLY  GYGTNTAALS+ALFN+G SCG CY++ C++  +P+WCL G ++ +T TN CPPN ALS+++GGWCNPP  HFDMAEPA+LQI  Y+AGIVP+ ++R+PC K+GG+RFT+ G +YF
Sbjct:   31 GWSSGTATFYGGSDASGTMGGACGYGNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEPRWCLQGRTVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYF 176          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 4.879e-49
Identity = 87/146 (59.59%), Postives = 105/146 (71.92%), Query Frame = 2
Query:  122 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            GW  G ATFY              YGNLY+QGYGT TAALSTALF++G SCG CY + C+   DP+WC  G S+ VTATNFCPPN AL +D+GGWCNPP  HFDMA+PA+ +I  YR GIVP++FRR+PC ++GG+RFTV G  YF
Sbjct:   33 GWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYF 178          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 4.879e-49
Identity = 87/146 (59.59%), Postives = 107/146 (73.29%), Query Frame = 2
Query:  122 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            G  +GHATFY              YG+LYS GYGT TAALSTALFN+G SCG CY + C++  D +WCL G S+++TATNFCPPN AL N+NGGWCNPPL+HFDMA+PA+ +I  YR GIVP+ F+R+ C KKGG+RF +NG  YF
Sbjct:   25 GLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYF 170          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 8.323e-49
Identity = 85/156 (54.49%), Postives = 109/156 (69.87%), Query Frame = 2
Query:   98 GTFGDYGG-----GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            G    +GG     GW  G ATFY              YG+L+ QGYG  TAALSTALFNNG  CG+CYE+ CE+ P+WCLPGSI +TATNFCPP+    NDN  WCNPP +HFD+++P FL+IA+Y+AG+VP+ FRR+PCAK GG++F + G+ +F
Sbjct:   76 GALPSHGGQVPHSGWGHGRATFYGDINGGETQQGACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFCPPDFTKPNDN--WCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHF 229          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.202e-47
Identity = 87/144 (60.42%), Postives = 102/144 (70.83%), Query Frame = 2
Query:  125 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN-DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            W    ATFY              YG+LY  GYGT TAALSTALFN G SCG+C+ + C+    +WC PG SI VTATNFCPPN ALS D GGWCNPP +HFDM++PA+  IA YRAGIVP+++RR+PC + GGIRF VNGHSYF
Sbjct:   25 WTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRRVPCQRSGGIRFAVNGHSYF 168          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 1.570e-47
Identity = 85/146 (58.22%), Postives = 103/146 (70.55%), Query Frame = 2
Query:  122 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN--DPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            GW    ATFY              YG+LYS GYGTNTAALST LFN+G SCG CY + C+   D ++C+ G S+ +TATN CPPN AL ND GGWCNPP QHFDMAEPA+L+I  Y  GIVP+ ++R+PCAK+GG+RFT+NG  YF
Sbjct:   33 GWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYF 178          
The following BLAST results are available for this feature:
BLAST of DN617513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
EXP14_ORYSJ2.587e-5058.90Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ORYSJ5.764e-5058.90Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ1.677e-4958.90Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH2.861e-4959.59Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP15_ORYSJ3.736e-4958.22Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ4.879e-4959.59Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH4.879e-4959.59Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP24_ARATH8.323e-4954.49Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXPA8_ORYSJ1.202e-4760.42Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA1_ORYSJ1.570e-4758.22Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617513 ID=DN617513; Name=DN617513; organism=Citrus sinensis; type=EST; length=553bp
ACATAAACATAAGCAGCCAGCAGTAGCAGCCATGACCAATATTGCAGCAT
CATCTAGTGTTGCTCTCCTTTTGTTTGTGCTCAATTTTTGCTTTCGTGGC
ACATTTGGAGACTATGGTGGTGGGTGGCAAAGTGGCCATGCAACTTTCTA
TGGCGGGGGTGATGCTTCCGGCACAATGGGTGGTGCTTGTGGGTATGGCA
ATTTGTACAGCCAAGGCTATGGGACTAACACTGCAGCACTCAGTACCGCT
CTATTCAACAATGGCCTAAGCTGTGGTTCATGCTATGAAATGAAATGTGA
AAATGACCCCAAGTGGTGCCTCCCCGGCTCCATCATTGTCACCGCCACCA
ACTTCTGCCCACCTAACCTTGCCCTGTCTAACGACAACGGCGGTTGGTGC
AATCCTCCCCTCCAGCACTTTGACATGGCTGAGCCCGCTTTCTTGCAAAT
TGCCCAATACCGCGCCGGTATCGTCCCAATTTCCTTCAGAAGGATCCCGT
GTGCGAAGAAAGGAGGAATAAGGTTTACCGTCAATGGACACTCATACTTC
AAC
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