DN617513

Overview
NameDN617513
Unique NameDN617513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12590 contig Csv1_Contig12590:50..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.677e-47
Identity = 84/153 (54.90%), Postives = 108/153 (70.59%), Query Frame = 2
Query:  119 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN----DPKWCLPG----SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN 553
            G W   HATFY              YGN Y QGYGT+TAALS  +F +GLSCG+C+E++C      D + CLP     SI+VTAT+ CP N AL  D GGWCNPPL HFD+++PAFL+IA++++GIVP+S+RR+ C +KGG+RFT+NGHSYFN
Sbjct:   28 GRWTDAHATFYGGADASGTMGGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFN 180          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.267e-46
Identity = 83/150 (55.33%), Postives = 106/150 (70.67%), Query Frame = 2
Query:  107 GDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN 553
            G + G W + HATFY              YGNLYSQGYG  TAALSTALF+ GLSCG+C+E+ C NDP+WC+ G SI+VTATNFCPP        GG C+PP  HFD+++P + +IA Y++GI+P+ +RR+ C + GGIRFT+NGHSYFN
Sbjct:   32 GGHMGPWINAHATFYGGGDASGTMGGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELMCVNDPQWCIKGRSIVVTATNFCPP--------GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRRVRCKRSGGIRFTINGHSYFN 173          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 8.613e-46
Identity = 81/142 (57.04%), Postives = 106/142 (74.65%), Query Frame = 2
Query:  131 SGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE-NDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            SG ATFY              YGNLYS GYGTNTAALS+ALFN+G +CG CY++ C+ ++ KWC  G S+ +TATN CPP+ +  +++GGWCNPP QHFDMA+PA+ QI  YR GIVP++F+R+ C +KGG+RFT+NG+SYF
Sbjct:   26 SGTATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQRVSCTRKGGVRFTINGNSYF 167          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 4.275e-45
Identity = 77/142 (54.23%), Postives = 99/142 (69.72%), Query Frame = 2
Query:  125 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            W    ATFY              YG+L+ QGYG  TAALSTALFN G +CG+CY++ C NDP+WCLPGS+ +TATNFCPP+   S   G WCNPP +HFD++ P FL+IAQY+AG+VP+ +RRI CA+ GG++F   G+ YF
Sbjct:   48 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPGSVKITATNFCPPD--YSKTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYF 187          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 5.583e-45
Identity = 82/157 (52.23%), Postives = 104/157 (66.24%), Query Frame = 2
Query:   89 CFRGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE--NDPKWCLPGSII-VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            C         GGW SG ATFY              YGNLY+QGYG   AALSTALFN G SCG CY + C+    P+WC  G+ + +TATN CPPN AL+ND+GGWCNPP  HFDM++PA+  I  YRAGIVP+ ++++ C ++GG+RFTV+G +YF
Sbjct:   15 CITSASAAAAGGWVSGTATFYGGKDASGTMGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYF 171          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.244e-44
Identity = 80/147 (54.42%), Postives = 99/147 (67.35%), Query Frame = 2
Query:  119 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFN 553
            G W+  HATFY              Y +   +GYG  T A+ST LF  G  CG+CYE+KC + P  C  G+  ++VTATN CPPN   SNDNGGWCNPP +HFD++ PAFLQIAQ +AGIVPIS+RR+PC K GGIR+T+ G+ YFN
Sbjct:   40 GPWKQAHATFYGGRDGSGTLDGACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFN 186          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 2.771e-44
Identity = 76/142 (53.52%), Postives = 99/142 (69.72%), Query Frame = 2
Query:  125 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            W    ATFY              YG+L+ QGYG  TAALSTALFN G +CG+CY++ C +DP+WCLPG+I +TATNFCPP+   S   G WCNPP +HFD++ P FL+IAQY+AG+VP+ +RRI CA+ GG++F   G+ YF
Sbjct:   55 WYDARATFYGDIHGGETQQGACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFCPPD--YSKTEGVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYF 194          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 6.172e-44
Identity = 79/144 (54.86%), Postives = 102/144 (70.83%), Query Frame = 2
Query:  128 QSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE-NDPKWCLPG--SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            QS  ATFY              YGNLY+ GYG   AALS+ALFN+G  CG+CY + C+ +  KWC PG  SI +TATN CPPN AL +++GGWCNPP QHFDM++PA+  IA Y+AGIVP++++R+PC + GGIRF ++GH YF
Sbjct:   29 QSAFATFYGGKDGSGTMGGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKRVPCQRSGGIRFAISGHDYF 172          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 6.172e-44
Identity = 79/144 (54.86%), Postives = 98/144 (68.06%), Query Frame = 2
Query:  125 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPK-WCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            W    ATFY              YGNLY+ GYG N AALS+ALFN+G  CG+CY + C+     WC PG SI +TATN CPPN A  +D GGWCNPP +HFDM++PA+  IA Y+AGIVP++F+R+PC K GGIRFT++G  YF
Sbjct:   23 WTPATATFYGGSDGAGTMGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKRVPCQKSGGIRFTISGRDYF 166          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 6.172e-44
Identity = 76/142 (53.52%), Postives = 99/142 (69.72%), Query Frame = 2
Query:  125 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            W    ATFY              YGNL+ QGYG  TAALSTALFN+G +CG+CYE+ C  DP+WCLPGS+ +TATNFCP N + + D   WCNPP +HFD++   FL+IA+Y+AG+VP+ +RRIPC+K GG++F   G+ YF
Sbjct:   58 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYF 197          
The following BLAST results are available for this feature:
BLAST of DN617513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
EXP21_ORYSJ2.677e-4754.90Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA5_ARATH2.267e-4655.33Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXP12_ORYSJ8.613e-4657.04Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ARATH4.275e-4554.23Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP28_ORYSJ5.583e-4552.23Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP32_ORYSJ1.244e-4454.42Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ARATH2.771e-4453.52Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXPA3_ORYSJ6.172e-4454.86Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP33_ORYSJ6.172e-4454.86Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ARATH6.172e-4453.52Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617513 ID=DN617513; Name=DN617513; organism=Citrus sinensis; type=EST; length=553bp
ACATAAACATAAGCAGCCAGCAGTAGCAGCCATGACCAATATTGCAGCAT
CATCTAGTGTTGCTCTCCTTTTGTTTGTGCTCAATTTTTGCTTTCGTGGC
ACATTTGGAGACTATGGTGGTGGGTGGCAAAGTGGCCATGCAACTTTCTA
TGGCGGGGGTGATGCTTCCGGCACAATGGGTGGTGCTTGTGGGTATGGCA
ATTTGTACAGCCAAGGCTATGGGACTAACACTGCAGCACTCAGTACCGCT
CTATTCAACAATGGCCTAAGCTGTGGTTCATGCTATGAAATGAAATGTGA
AAATGACCCCAAGTGGTGCCTCCCCGGCTCCATCATTGTCACCGCCACCA
ACTTCTGCCCACCTAACCTTGCCCTGTCTAACGACAACGGCGGTTGGTGC
AATCCTCCCCTCCAGCACTTTGACATGGCTGAGCCCGCTTTCTTGCAAAT
TGCCCAATACCGCGCCGGTATCGTCCCAATTTCCTTCAGAAGGATCCCGT
GTGCGAAGAAAGGAGGAATAAGGTTTACCGTCAATGGACACTCATACTTC
AAC
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