DN617513

Overview
NameDN617513
Unique NameDN617513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 6.172e-44
Identity = 76/142 (53.52%), Postives = 99/142 (69.72%), Query Frame = 2
Query:  125 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            W    ATFY              YGNL+ QGYG  TAALSTALFN+G +CG+CYE+ C  DP+WCLPGS+ +TATNFCP N + + D   WCNPP +HFD++   FL+IA+Y+AG+VP+ +RRIPC+K GG++F   G+ YF
Sbjct:   52 WYDARATFYGDIHGGDTQQGACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYF 191          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.375e-43
Identity = 78/146 (53.42%), Postives = 103/146 (70.55%), Query Frame = 2
Query:  122 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN--DPKWCLPGSII-VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            GW  G ATFY              YGNLY+ GYGTNTAALS+ LFN+G SCG CY + C+    P+WC  G+ + +TATN CPPN AL +++GGWCNPP  HFDMAEPA+LQI  Y+AGI+P+ ++++ C ++GGIRFT+ G ++F
Sbjct:   26 GWNKGTATFYGGADASGTMGGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAGAAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFF 171          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.986e-42
Identity = 78/145 (53.79%), Postives = 98/145 (67.59%), Query Frame = 2
Query:  125 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDP--KWCLP-GSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            W    ATFY              YGNLY QGYG   AALSTALFN+G +CG CY + C+ D   +WC P G++ VTATN CPPN AL +D GGWCNPP +HFDM++PA+ +I  YRAGIVP+ +RR+ C ++GG+RFTV G  +F
Sbjct:   27 WIPATATFYGGNDGSGTMGGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRGAVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHF 171          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.867e-41
Identity = 71/144 (49.31%), Postives = 96/144 (66.67%), Query Frame = 2
Query:  119 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            G W+  HATFY              YGNL++ GYG +TAALST LFN+G  CG C+++ C   P      S +VTATN CPPN    ++ GGWCNPP  HFDMA+PAF+++A +RAGI+P+++RR+PC + GG+RF   G+SY+
Sbjct:   35 GPWRYAHATFYGDETGGETMGGACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKSTVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYW 178          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 2.867e-41
Identity = 77/145 (53.10%), Postives = 97/145 (66.90%), Query Frame = 2
Query:  125 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPGSII-VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            W    ATFY              YGNLY QGYG + AALS ALFN+G SCG CY + C+    P+WC  G+ + VTATN CPPN AL +D GGWCNPP  HFDM++PA+ QI  Y+AGIVP+ ++R+ C ++GG+RFTV G +YF
Sbjct:   28 WSPATATFYGGSDGSGTMGGACGYGNLYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGTAVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYF 172          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 6.388e-41
Identity = 76/150 (50.67%), Postives = 99/150 (66.00%), Query Frame = 2
Query:  107 GDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE-NDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            G+    W S  ATFY              YGN+YS GYGTNT ALS+AL+ +G SCG+CY + C+ +  +WC  G S+ VTATN+CPPN + S D GGWCNPP +HFDM++PA+  IA Y +GIVP+ + R PC + GGIRF + GH Y+
Sbjct:   21 GEAAQQWTSATATFYGGSDASGTMGGSCGYGNMYSAGYGTNTTALSSALYGDGASCGACYLVTCDASATRWCKNGTSVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYY 170          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.427e-40
Identity = 73/147 (49.66%), Postives = 97/147 (65.99%), Query Frame = 2
Query:  116 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            G  W++  ATFY              YGN+Y  GYG  T ALSTALFN G +CG C+++KC + P  C  GS   +VTATN CPPN   +++NGGWCNPP  HFD+ +PAF++IA ++AGI+P+S+RR+ C K GGIRF   G+ Y+
Sbjct:   28 GTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYW 173          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.170e-40
Identity = 76/146 (52.05%), Postives = 97/146 (66.44%), Query Frame = 2
Query:  125 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGG--WCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            W   HATFY              YGNLY+ GYGT+TAALST LF +G  CG+CY+M+C      C  GS  I VTATN CPPN A   D GG  WCNPP  HFD+++PAF+++A +RAGIVP+ +RR+PCA+ GG+RF + G+ Y+
Sbjct:   37 WTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYW 181          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 7.308e-37
Identity = 72/146 (49.32%), Postives = 90/146 (61.64%), Query Frame = 2
Query:  125 WQSGHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            W  G ATFY                  N     Y T TAALST LF +G  CG CYE++C   P WC PGS  +++T TN CPPN  L ND+GGWCNPP  HFDMA P+FL++AQ  AGIVP+ +RR+PC + GG+RF + G+ Y+
Sbjct:   52 WHDGSATFYGDPSGMGDDFGGACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYW 196          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 2.777e-36
Identity = 76/146 (52.05%), Postives = 89/146 (60.96%), Query Frame = 2
Query:  122 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYF 550
            GW  G ATFY              YGNLY QGYG N AALST LFNNG SCG CY + C  D  P  C  G +I VT TNFCPPN  L    GGWCN    HFDM++PA+  I  Y AGIVPI ++++ C + GG+RFT+ G +YF
Sbjct:   22 GWLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGTAITVTGTNFCPPNYDL--PYGGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYF 165          
The following BLAST results are available for this feature:
BLAST of DN617513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
EXP22_ARATH6.172e-4453.52Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP25_ORYSJ1.375e-4353.42Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ1.986e-4253.79Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXPA7_ARATH2.867e-4149.31Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP31_ORYSJ2.867e-4153.10Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ6.388e-4150.67Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP18_ARATH2.427e-4049.66Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP30_ORYSJ3.170e-4052.05Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP17_ORYSJ7.308e-3749.32Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ORYSJ2.777e-3652.05Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617513 ID=DN617513; Name=DN617513; organism=Citrus sinensis; type=EST; length=553bp
ACATAAACATAAGCAGCCAGCAGTAGCAGCCATGACCAATATTGCAGCAT
CATCTAGTGTTGCTCTCCTTTTGTTTGTGCTCAATTTTTGCTTTCGTGGC
ACATTTGGAGACTATGGTGGTGGGTGGCAAAGTGGCCATGCAACTTTCTA
TGGCGGGGGTGATGCTTCCGGCACAATGGGTGGTGCTTGTGGGTATGGCA
ATTTGTACAGCCAAGGCTATGGGACTAACACTGCAGCACTCAGTACCGCT
CTATTCAACAATGGCCTAAGCTGTGGTTCATGCTATGAAATGAAATGTGA
AAATGACCCCAAGTGGTGCCTCCCCGGCTCCATCATTGTCACCGCCACCA
ACTTCTGCCCACCTAACCTTGCCCTGTCTAACGACAACGGCGGTTGGTGC
AATCCTCCCCTCCAGCACTTTGACATGGCTGAGCCCGCTTTCTTGCAAAT
TGCCCAATACCGCGCCGGTATCGTCCCAATTTCCTTCAGAAGGATCCCGT
GTGCGAAGAAAGGAGGAATAAGGTTTACCGTCAATGGACACTCATACTTC
AAC
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