DN617513

Overview
NameDN617513
Unique NameDN617513
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.038e-11
Identity = 45/149 (30.20%), Postives = 67/149 (44.97%), Query Frame = 2
Query:   98 GTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWC-LPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG 514
            G+ G  GGGW +  AT+Y               G  N+    +   T+  +  LF +G  CGSCY+++C   P    LP ++I+T  N+ P +              L HFD++  AF  +A+         AGI+ I FRR+PC   G
Sbjct:   83 GSSGGGGGGWLNARATWYGAPNGAGPDDNGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPACSGLPETVIITDMNYYPVS--------------LYHFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPG 217          
BLAST of DN617513 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.274e-11
Identity = 45/150 (30.00%), Postives = 69/150 (46.00%), Query Frame = 2
Query:  122 GWQSGHATFYXXXXXXXXXXXXXXY-GNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKG-GIRFTVNGHS 544
            GW  G AT+Y              Y G++    + +  AA S +++ +G  CGSCY++KC  +P  C    + V  T+ CP         GG C     HFD++  AF  +A+         AG +P+ + R+PC  +G  I F V+  S
Sbjct:   37 GWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CSGKPVTVVLTDLCP---------GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGS 176          
The following BLAST results are available for this feature:
BLAST of DN617513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
EXPB7_ORYSJ4.038e-1130.20Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB14_ORYSJ5.274e-1130.00Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617513 ID=DN617513; Name=DN617513; organism=Citrus sinensis; type=EST; length=553bp
ACATAAACATAAGCAGCCAGCAGTAGCAGCCATGACCAATATTGCAGCAT
CATCTAGTGTTGCTCTCCTTTTGTTTGTGCTCAATTTTTGCTTTCGTGGC
ACATTTGGAGACTATGGTGGTGGGTGGCAAAGTGGCCATGCAACTTTCTA
TGGCGGGGGTGATGCTTCCGGCACAATGGGTGGTGCTTGTGGGTATGGCA
ATTTGTACAGCCAAGGCTATGGGACTAACACTGCAGCACTCAGTACCGCT
CTATTCAACAATGGCCTAAGCTGTGGTTCATGCTATGAAATGAAATGTGA
AAATGACCCCAAGTGGTGCCTCCCCGGCTCCATCATTGTCACCGCCACCA
ACTTCTGCCCACCTAACCTTGCCCTGTCTAACGACAACGGCGGTTGGTGC
AATCCTCCCCTCCAGCACTTTGACATGGCTGAGCCCGCTTTCTTGCAAAT
TGCCCAATACCGCGCCGGTATCGTCCCAATTTCCTTCAGAAGGATCCCGT
GTGCGAAGAAAGGAGGAATAAGGTTTACCGTCAATGGACACTCATACTTC
AAC
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