DN617498

Overview
NameDN617498
Unique NameDN617498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G_DANRE (Elongation factor 1-gamma OS=Danio rerio GN=eef1g PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.734e-13
Identity = 34/106 (32.08%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  212 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDEC-YDMELYDWKKADISDEEQKERVNQMIEDHEPFEGE 526
            +W+ +Y++ +E T++F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG ++   + D+   D E Y W+K D+  EE K     M++++  +EGE
Sbjct:  326 IWYAEYRFPEELTMAFMSCNLITGMFQRLDKLRKNAFASVILFGANNDSCISGIWVFRGQDLAFPLSDDWQIDYESYTWRKLDVDSEECK----TMVKEYFAWEGE 427          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G_CAEEL (Probable elongation factor 1-gamma OS=Caenorhabditis elegans GN=F17C11.9 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.734e-13
Identity = 34/115 (29.57%), Postives = 63/115 (54.78%), Query Frame = -3
Query:  185 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 526
            +W C+YKY ++ T++F++ N ++G  QR++  +K AF  M++ G +    + G+W+++G ++  +   D   D E Y W K D   +  K+ VN+ +     F G+     K FK
Sbjct:  284 IWKCEYKYPEDLTLAFMSCNLINGMYQRLEKLKKNAFASMILFGTDNNSTISGIWVWKGDKLAFELSPDWQVDYESYTWTKLDAKSDATKKEVNEYLMWEGDFGGKKFNQGKIFK 398          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G_MOUSE (Elongation factor 1-gamma OS=Mus musculus GN=Eef1g PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 2.958e-13
Identity = 38/117 (32.48%), Postives = 62/117 (52.99%), Query Frame = -3
Query:  185 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 526
            LW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D   EE +  V +       F+  G+A+   K FK
Sbjct:  321 LWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGTFQHVGKAVNQGKIFK 437          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G_MACFA (Elongation factor 1-gamma OS=Macaca fascicularis GN=EEF1G PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 38/117 (32.48%), Postives = 61/117 (52.14%), Query Frame = -3
Query:  185 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 526
            LW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D   EE +  V +       F+  G+A    K FK
Sbjct:  321 LWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 437          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G_HUMAN (Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 38/117 (32.48%), Postives = 61/117 (52.14%), Query Frame = -3
Query:  185 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 526
            LW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D   EE +  V +       F+  G+A    K FK
Sbjct:  321 LWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAFNQGKIFK 437          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G_HORSE (Elongation factor 1-gamma OS=Equus caballus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 38/117 (32.48%), Postives = 61/117 (52.14%), Query Frame = -3
Query:  185 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 526
            LW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D   EE +  V +       F+  G+A    K FK
Sbjct:  321 LWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEEAQTLVREYFSWEGAFQHVGKAFNQGKIFK 437          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G_ARTSA (Elongation factor 1-gamma OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 33/95 (34.74%), Postives = 54/95 (56.84%), Query Frame = -3
Query:  245 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQ 526
            +W+ +YKY DE    +++ N ++G  QR++  RK AF  + + G +    + G+W++RG ++  K   D   D E YDWKK D   +E K+ V Q
Sbjct:  315 IWYSEYKYQDELAKVYMSCNLITGMFQRIEKMRKQAFASVCVFGEDNDSSISGIWVWRGQDLAFKLSPDWQIDYESYDWKKLDPDAQETKDLVTQ 409          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G_RAT (Elongation factor 1-gamma OS=Rattus norvegicus GN=Eef1g PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 6.591e-13
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = -3
Query:  185 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 526
            LW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG ++      D   D E Y W+K D   EE +  V +       F+  G+A+   K FK
Sbjct:  321 LWYAEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQDLAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAFQHVGKAVNQGKIFK 437          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1GA_XENLA (Elongation factor 1-gamma-A OS=Xenopus laevis GN=eef1g-A PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.608e-13
Identity = 34/107 (31.78%), Postives = 63/107 (58.88%), Query Frame = -3
Query:  212 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECY--DMELYDWKKADISDEEQKERVNQMIEDHEPFEGE 526
            +W+ +YK+ +E T +F++ N ++G  QR+D  RK  F  +++ G      + G+W+FRG ++  F + E +  D E Y+W+K D   EE K     +++++  +EGE
Sbjct:  320 IWYAEYKFPEELTQAFMSCNLITGMFQRLDKLRKTGFASVILFGTNNNSSISGVWVFRGQDL-AFTLSEDWQIDYESYNWRKLDSGSEECK----TLVKEYFAWEGE 421          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G_PIG (Elongation factor 1-gamma (Fragment) OS=Sus scrofa GN=EEF1G PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.124e-12
Identity = 37/117 (31.62%), Postives = 61/117 (52.14%), Query Frame = -3
Query:  185 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 526
            LW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG E+      D   D E Y W+K D   EE +  V +       ++  G+A    K FK
Sbjct:  316 LWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWVFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFSWEGAYQHVGKAFNQGKIFK 432          
The following BLAST results are available for this feature:
BLAST of DN617498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
EF1G_DANRE1.734e-1332.08Elongation factor 1-gamma OS=Danio rerio GN=eef1g ... [more]
EF1G_CAEEL1.734e-1329.57Probable elongation factor 1-gamma OS=Caenorhabdit... [more]
EF1G_MOUSE2.958e-1332.48Elongation factor 1-gamma OS=Mus musculus GN=Eef1g... [more]
EF1G_MACFA5.046e-1332.48Elongation factor 1-gamma OS=Macaca fascicularis G... [more]
EF1G_HUMAN5.046e-1332.48Elongation factor 1-gamma OS=Homo sapiens GN=EEF1G... [more]
EF1G_HORSE5.046e-1332.48Elongation factor 1-gamma OS=Equus caballus GN=EEF... [more]
EF1G_ARTSA5.046e-1334.74Elongation factor 1-gamma OS=Artemia salina PE=1 S... [more]
EF1G_RAT6.591e-1331.62Elongation factor 1-gamma OS=Rattus norvegicus GN=... [more]
EF1GA_XENLA8.608e-1331.78Elongation factor 1-gamma-A OS=Xenopus laevis GN=e... [more]
EF1G_PIG1.124e-1231.62Elongation factor 1-gamma (Fragment) OS=Sus scrofa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617498 ID=DN617498; Name=DN617498; organism=Citrus sinensis; type=EST; length=528bp
TTTTTTTTTTTTTTTTTAAAAAGATGTCCAAATCATCCTCAAAATTGCGA
CAAAATTATAAGTTAATACTATAACACAAAATACTAGACTTCGATCTTTC
TGAATTCGAAACACAAACAAACTCTACCAATAACCAAAGACAAACATGAA
CATCTTAAAACTAGAAAAAAGATTAAGCTCATCACTTGAAGCACTTAGCA
TCCAAAAGAGCTTCACCCTCAAAAGGCTCGTGATCCTCGATCATCTGGTT
CACACGTTCCTTTTGCTCTTCGTCTGAGATGTCAGCCTTCTTCCAGTCAT
ACAATTCCATGTCATAGCACTCATCCATGACGAATTTAGGAATTTCTGGG
CCACGGAAGAGCCACAACCCCTTGACTTTGTATGGAGGCTCGTTGCCGAT
AATTAACATCTTTCCAAACGCATACTTGCGAGCCAGATCCATCCTCTGAA
GAAACCCACTAACCTTGTTCAAGGTCACGAATGACACAGTATTCTCGTCA
TTGTATTTGTAATCACAGAACCAAAGTG
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