DN617498

Overview
NameDN617498
Unique NameDN617498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12382 contig Csv1_Contig12382:971..1498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1GB_XENLA (Elongation factor 1-gamma-B OS=Xenopus laevis GN=eef1g-B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.468e-12
Identity = 37/118 (31.36%), Postives = 64/118 (54.24%), Query Frame = -3
Query:  185 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECY--DMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 526
            +W+ +YK+ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W+FRG ++  F + E +  D E Y W+K +   EE +  V +       F+  G+A    K FK
Sbjct:  321 IWYAEYKFPEELTQTFMSCNLITGMFQRLDKLRKTAFASVILFGTNNNSTISGVWVFRGHDL-AFTLSEDWQIDYESYTWRKLESDSEECRTMVKEYFAWEGEFKHVGKAFNQGKIFK 437          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G_BOVIN (Elongation factor 1-gamma OS=Bos taurus GN=EEF1G PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.579e-12
Identity = 38/117 (32.48%), Postives = 60/117 (51.28%), Query Frame = -3
Query:  185 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEIP-KFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFE--GEALLDAKCFK 526
            LW+ +Y++ +E T +F++ N ++G  QR+D  RK AF  +++ G      + G+W FRG E+      D   D E Y W+K D   EE +  V +       F+  G+A    K FK
Sbjct:  324 LWYSEYRFPEELTQTFMSCNLITGMFQRLDKLRKNAFASVILFGTNNSSSISGVWDFRGQELAFPLSPDWQVDYESYTWRKLDPGSEETQTLVREYFCWEGAFQHVGKAFNQGKIFK 440          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G1_YEAST (Elongation factor 1-gamma 1 OS=Saccharomyces cerevisiae GN=CAM1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.579e-12
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = -3
Query:  185 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPE-IPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPF----EGEALLDAKCFK 526
            LW   YKYNDE T++F++ N V GF  R+  + KY FG +++ G      + G  + RG + +P F  D   D E YD+ K D ++++ KE +N M    +P     E + ++D K  K
Sbjct:  299 LWKVTYKYNDELTLTFMSNNLVGGFFNRLSASTKYMFGCLVVYGENNNNGIVGAVMVRGQDYVPAF--DVAPDWESYDYAKLDPTNDDDKEFINNMWAWDKPVSVNGEPKEIVDGKVLK 415          
BLAST of DN617498 vs. ExPASy Swiss-Prot
Match: EF1G2_YEAST (Elongation factor 1-gamma 2 OS=Saccharomyces cerevisiae GN=TEF4 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 42/119 (35.29%), Postives = 62/119 (52.10%), Query Frame = -3
Query:  185 LWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLIIGNEPPYKVKGLWLFRGPEI-PKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPF----EGEALLDAKCFK 526
            +W   YKYNDE T++F++ N V GF  R+  + KY FG +++ G      + G  + RG +  P F  D   D E Y++ K D + EE KE VN M    +P     E + ++D K  K
Sbjct:  296 IWKVGYKYNDELTLTFMSNNLVGGFFNRLSASTKYMFGCLVVYGENNNNGIVGAVMVRGQDFAPAF--DVAPDWESYEYTKLDPTKEEDKEFVNNMWAWDKPVVVNGEDKEIVDGKVLK 412          
The following BLAST results are available for this feature:
BLAST of DN617498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
EF1GB_XENLA1.468e-1231.36Elongation factor 1-gamma-B OS=Xenopus laevis GN=e... [more]
EF1G_BOVIN5.579e-1232.48Elongation factor 1-gamma OS=Bos taurus GN=EEF1G P... [more]
EF1G1_YEAST5.579e-1234.45Elongation factor 1-gamma 1 OS=Saccharomyces cerev... [more]
EF1G2_YEAST1.243e-1135.29Elongation factor 1-gamma 2 OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617498 ID=DN617498; Name=DN617498; organism=Citrus sinensis; type=EST; length=528bp
TTTTTTTTTTTTTTTTTAAAAAGATGTCCAAATCATCCTCAAAATTGCGA
CAAAATTATAAGTTAATACTATAACACAAAATACTAGACTTCGATCTTTC
TGAATTCGAAACACAAACAAACTCTACCAATAACCAAAGACAAACATGAA
CATCTTAAAACTAGAAAAAAGATTAAGCTCATCACTTGAAGCACTTAGCA
TCCAAAAGAGCTTCACCCTCAAAAGGCTCGTGATCCTCGATCATCTGGTT
CACACGTTCCTTTTGCTCTTCGTCTGAGATGTCAGCCTTCTTCCAGTCAT
ACAATTCCATGTCATAGCACTCATCCATGACGAATTTAGGAATTTCTGGG
CCACGGAAGAGCCACAACCCCTTGACTTTGTATGGAGGCTCGTTGCCGAT
AATTAACATCTTTCCAAACGCATACTTGCGAGCCAGATCCATCCTCTGAA
GAAACCCACTAACCTTGTTCAAGGTCACGAATGACACAGTATTCTCGTCA
TTGTATTTGTAATCACAGAACCAAAGTG
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