DN617491

Overview
NameDN617491
Unique NameDN617491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2408 contig Csv1_Contig2408:46..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_YERPS (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis GN=ghrB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.929e-30
Identity = 84/238 (35.29%), Postives = 130/238 (54.62%), Query Frame = 1
Query:   79 TYLEQELERRF--NLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            T L Q L + F  N F   T  ++ + L A Q     ++G+     D + +   P L   S+ SVG D  DV    ++G+ + +TP VLT+ VAD  + LML+  RR+ E    V++G+W++  GD         KT+GI+G+GRIGMA+A+RA   FS P+ Y SR      + ++   + S+  L +    L +  P+TE+T H+I RE +  +    +LIN GRGP VDE+ L++
Sbjct:   13 TDLHQRLAQHFTVNSFDGLTPDNQPELLAALQQ-AEGLIGSG-GKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_YERPP (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis (strain Pestoides F) GN=ghrB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.929e-30
Identity = 84/238 (35.29%), Postives = 130/238 (54.62%), Query Frame = 1
Query:   79 TYLEQELERRF--NLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            T L Q L + F  N F   T  ++ + L A Q     ++G+     D + +   P L   S+ SVG D  DV    ++G+ + +TP VLT+ VAD  + LML+  RR+ E    V++G+W++  GD         KT+GI+G+GRIGMA+A+RA   FS P+ Y SR      + ++   + S+  L +    L +  P+TE+T H+I RE +  +    +LIN GRGP VDE+ L++
Sbjct:   13 TDLHQRLAQHFTVNSFDGLTPDNQPELLAALQQ-AEGLIGSG-GKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_YERPN (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ghrB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.929e-30
Identity = 84/238 (35.29%), Postives = 130/238 (54.62%), Query Frame = 1
Query:   79 TYLEQELERRF--NLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            T L Q L + F  N F   T  ++ + L A Q     ++G+     D + +   P L   S+ SVG D  DV    ++G+ + +TP VLT+ VAD  + LML+  RR+ E    V++G+W++  GD         KT+GI+G+GRIGMA+A+RA   FS P+ Y SR      + ++   + S+  L +    L +  P+TE+T H+I RE +  +    +LIN GRGP VDE+ L++
Sbjct:   13 TDLHQRLAQHFTVNSFDGLTPDNQPELLAALQQ-AEGLIGSG-GKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQTLIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_YERPG (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ghrB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.929e-30
Identity = 84/238 (35.29%), Postives = 130/238 (54.62%), Query Frame = 1
Query:   79 TYLEQELERRF--NLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            T L Q L + F  N F   T  ++ + L A Q     ++G+     D + +   P L   S+ SVG D  DV    ++G+ + +TP VLT+ VAD  + LML+  RR+ E    V++G+W++  GD         KT+GI+G+GRIGMA+A+RA   FS P+ Y SR      + ++   + S+  L +    L +  P+TE+T H+I RE +  +    +LIN GRGP VDE+ L++
Sbjct:   13 TDLHQRLAQHFTVNSFDGLTPDNQPELLAALQQ-AEGLIGSG-GKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_YERPE (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis GN=ghrB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.929e-30
Identity = 84/238 (35.29%), Postives = 130/238 (54.62%), Query Frame = 1
Query:   79 TYLEQELERRF--NLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            T L Q L + F  N F   T  ++ + L A Q     ++G+     D + +   P L   S+ SVG D  DV    ++G+ + +TP VLT+ VAD  + LML+  RR+ E    V++G+W++  GD         KT+GI+G+GRIGMA+A+RA   FS P+ Y SR      + ++   + S+  L +    L +  P+TE+T H+I RE +  +    +LIN GRGP VDE+ L++
Sbjct:   13 TDLHQRLAQHFTVNSFDGLTPDNQPELLAALQQ-AEGLIGSG-GKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_YERPB (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ghrB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.929e-30
Identity = 84/238 (35.29%), Postives = 130/238 (54.62%), Query Frame = 1
Query:   79 TYLEQELERRF--NLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            T L Q L + F  N F   T  ++ + L A Q     ++G+     D + +   P L   S+ SVG D  DV    ++G+ + +TP VLT+ VAD  + LML+  RR+ E    V++G+W++  GD         KT+GI+G+GRIGMA+A+RA   FS P+ Y SR      + ++   + S+  L +    L +  P+TE+T H+I RE +  +    +LIN GRGP VDE+ L++
Sbjct:   13 TDLHQRLAQHFTVNSFDGLTPDNQPELLAALQQ-AEGLIGSG-GKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_YERPA (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ghrB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.929e-30
Identity = 84/238 (35.29%), Postives = 130/238 (54.62%), Query Frame = 1
Query:   79 TYLEQELERRF--NLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            T L Q L + F  N F   T  ++ + L A Q     ++G+     D + +   P L   S+ SVG D  DV    ++G+ + +TP VLT+ VAD  + LML+  RR+ E    V++G+W++  GD         KT+GI+G+GRIGMA+A+RA   FS P+ Y SR      + ++   + S+  L +    L +  P+TE+T H+I RE +  +    +LIN GRGP VDE+ L++
Sbjct:   13 TDLHQRLAQHFTVNSFDGLTPDNQPELLAALQQ-AEGLIGSG-GKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_YERP3 (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ghrB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.929e-30
Identity = 84/238 (35.29%), Postives = 130/238 (54.62%), Query Frame = 1
Query:   79 TYLEQELERRF--NLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            T L Q L + F  N F   T  ++ + L A Q     ++G+     D + +   P L   S+ SVG D  DV    ++G+ + +TP VLT+ VAD  + LML+  RR+ E    V++G+W++  GD         KT+GI+G+GRIGMA+A+RA   FS P+ Y SR      + ++   + S+  L +    L +  P+TE+T H+I RE +  +    +LIN GRGP VDE+ L++
Sbjct:   13 TDLHQRLAQHFTVNSFDGLTPDNQPELLAALQQ-AEGLIGSG-GKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVVDEQALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_PECCP (Glyoxylate/hydroxypyruvate reductase B OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ghrB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.633e-29
Identity = 84/228 (36.84%), Postives = 122/228 (53.51%), Query Frame = 1
Query:  106 RFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGA--DAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG---DYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDEREL 762
            R  L + +TV++   F       +    G   +G   D + +   P+L   S+ SVG D  +V    EKGV + +TP VLT+ VAD  + LMLA  RR+ E    V++G+WK G   D+   T    KT+GI+G+GRIG+AVA+RA   FS P+ Y +R      + ++   +  +  L +    L +  PLT ET H+I RE +  + P  +LINIGRG  VDE  L
Sbjct:   16 RARLDQHFTVTELDAFPSLDHPALATAEGIIGSGGKVDKDFLQHAPRLRAASTISVGYDTFNVDALNEKGVILMHTPTVLTETVADTVLALMLASARRVVEVAERVKAGEWKGGVDSDW-FGTDVHHKTIGILGMGRIGLAVAQRAHFGFSMPVLYNARRHHAEAEQRFNARHCDLDTLLAESDFLCITLPLTTETHHLIGREQLAKMKPSAILINIGRGAVVDEDAL 242          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_ERWT9 (Glyoxylate/hydroxypyruvate reductase B OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ghrB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.633e-29
Identity = 75/195 (38.46%), Postives = 115/195 (58.97%), Query Frame = 1
Query:  211 DAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTG-----KTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            DAE +   PKL + SS SVG D  DVA   ++GV + +TP VLT+ VAD  + L+L+  RR+ E    V+SG+W+     +++ + G     K +GI+G+GRIG+A+A+RA   F  PI Y +R      + ++   Y  +  L +    L ++ PLTE+T H+I RE +  +    +LIN GRGP VDE+ L++
Sbjct:   57 DAEFLRQAPKLRVASSISVGYDNFDVAALNDRGVLLMHTPTVLTETVADTMMALVLSSARRVVEMAERVKSGEWRG---SISSDWFGIDVHHKKLGILGMGRIGLALAQRAHLGFGMPILYNARKHHDEAEQRFDAEYCDLDTLLAESDFLCISLPLTEQTHHLIGREQLAKMKRSAILINAGRGPVVDEQALIA 248          
The following BLAST results are available for this feature:
BLAST of DN617491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
GHRB_YERPS1.929e-3035.29Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPP1.929e-3035.29Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPN1.929e-3035.29Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPG1.929e-3035.29Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPE1.929e-3035.29Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPB1.929e-3035.29Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPA1.929e-3035.29Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERP31.929e-3035.29Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_PECCP1.633e-2936.84Glyoxylate/hydroxypyruvate reductase B OS=Pectobac... [more]
GHRB_ERWT91.633e-2938.46Glyoxylate/hydroxypyruvate reductase B OS=Erwinia ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E11_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617491 ID=DN617491; Name=DN617491; organism=Citrus sinensis; type=EST; length=768bp
GGAAAATCCAACGTGGGTTCATTTTGTGATTTCAGTTGAATGGAGTCAAT
CGGTGTCTTGATGGCCTGTCCCATGAACACGTACTTAGAGCAGGAACTCG
AGAGAAGATTCAATCTTTTCAAGTTCTGGACGGTTTCAGACAAAACCCAG
TTCCTAAAAGCACAACAAAACAACATACGTGCGGTTGTCGGGAACGCGAC
GGCCGGTGCTGACGCTGAACTGATTGATGCTTTACCTAAGCTTGAGATTG
TATCGAGTTTTAGTGTGGGATTGGACAAGGTTGACGTGGCCAAGTGCAAA
GAAAAGGGCGTTAGAGTTACTAACACCCCTGATGTGTTGACTGATGACGT
GGCCGATTTGGCCATTGGGTTGATGTTGGCTGTGTTGAGGAGGTTGTGTG
AGAGCGATAGGTATGTCAGAAGTGGGAAGTGGAAGAAGGGGGATTATAAG
CTGACCACTAAGTTCACTGGAAAAACAGTTGGCATTATTGGGCTAGGAAG
AATTGGCATGGCAGTTGCTAAGAGAGCTGAAGCATTTAGCTGCCCAATCA
ACTACTACTCTAGAACAGAGAAACCAAATTTGAAATACAAATACTACCCT
AGTGTAGTTGAGTTGGCCTCCAACTGTCACATTCTGGTCGTTGCATGCCC
ACTAACGGAAGAGACCCGCCATATCATTAATCGTGAAGTCATTGATGCTT
TGGGACCAAAAGGTGTTCTCATCAACATTGGGAGGGGTCCTCACGTGGAT
GAACGTGAACTGTTGTCT
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