DN617491

Overview
NameDN617491
Unique NameDN617491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2408 contig Csv1_Contig2408:46..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: LDHD_PEDAC (D-lactate dehydrogenase OS=Pediococcus acidilactici GN=ldhD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 50/192 (26.04%), Postives = 91/192 (47.40%), Query Frame = 1
Query:  214 AELIDALPKLEI--VSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYK----LTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK--YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELL 765
            A+L D + +  I   S  +VGLD V     K+  ++++N P      +A+L++  +LA+LR++ E +      K   GDY+    +  +    TVG+IG GRIG A     + F   +  Y     P L+ +  Y  ++ EL    +++ +  P  ++  H+++ +    +     ++N  RG  VD   LL
Sbjct:   58 ADLFDKMHEFGIHAFSLRNVGLDNVPADALKKNDIKISNVPAYSPRAIAELSVTQLLALLRKIPEFEY-----KMAHGDYRWEPDIGLELNQMTVGVIGTGRIGRAAIDIFKPFGAKVIAYDVFRNPALEKEGMYVDTLEELYQQANVITLHVPALKDNYHMLDEKAFGQMQDGTFILNFARGTLVDTPALL 244          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: LDHD_LACDA (D-lactate dehydrogenase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=ldhA PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.619e-11
Identity = 54/185 (29.19%), Postives = 85/185 (45.95%), Query Frame = 1
Query:  214 AELIDALPKLEI--VSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYV--RSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK--YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVD 750
            AE + AL    I  +S  +VG+D +D+AK KE G ++TN P    + +A+ A      +LR+    D  V     +W      +  +   + VG+IG G IG    +  E F   +  Y     P L+ K  Y  S+ +L     ++ +  P      H+IN E I  +    V++N+ RGP VD
Sbjct:   60 AETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAP---TIGREVRDQVVGVIGTGHIGQVFMQIMEGFGAKVIAYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVD 241          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: LDHD_ECOLI (D-lactate dehydrogenase OS=Escherichia coli (strain K12) GN=ldhA PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.619e-11
Identity = 45/166 (27.11%), Postives = 81/166 (48.80%), Query Frame = 1
Query:  268 GLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPI---NYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDER 756
            G + VD+   KE G++V   P    + VA+ AIG+M+ + RR+  + +  R   +        T + GKT G+IG G+IG+A+ +  + F   +   + Y       L  +Y   +  L S   ++ + CPLT E  H++N    + +    +++N  RG  +D +
Sbjct:   78 GFNNVDLDAAKELGLKVVRVPAYDPEAVAEHAIGMMMTLNRRIHRAYQRTRDANFSLEGLTGFTMY-GKTAGVIGTGKIGVAMLRILKGFGMRLLAFDPYPSAAALELGVEYV-DLPTLFSESDVISLHCPLTPENYHLLNEAAFEQMKNGVMIVNTSRGALIDSQ 241          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: PDXB_SHESM (Erythronate-4-phosphate dehydrogenase OS=Shewanella sp. (strain MR-4) GN=pdxB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 50/189 (26.46%), Postives = 82/189 (43.39%), Query Frame = 1
Query:  211 DAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLT----EETRHIINREVIDALGPKGVLINIGRGPHVDERELL 765
            +A L+DA PKL+ V S ++G D VD+A    +G+  +N P      V + A   ML +  R                     +   GK VGI+G G  G A AK  EA+   +      +      +++ S+  L     I+ +  P+T     +T H+ +   + +L P   L+N  RG  +D + L+
Sbjct:   50 NAALLDANPKLKFVGSATIGTDHVDLAYLARRGIPFSNAPGCNATAVGEFAFIAMLELAAR-------------------FNSPLKGKVVGIVGAGNTGSATAKCLEAYGIKVLLNDPIKAAEGDPRHFVSLETLLHQADIISLHVPITRSGEHKTLHLFDEARLMSLKPNTWLVNCCRGDVIDNQALI 219          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: SERA_YEAST (D-3-phosphoglycerate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=SER3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.835e-11
Identity = 52/216 (24.07%), Postives = 99/216 (45.83%), Query Frame = 1
Query:  121 KFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELL 765
            +F+  S   + L  +  ++ A+   +     + ++     L  +  F +G ++VD+     +G+ V N+P   +  VA+L I  ++++ R+L +    + +G W K   +   +  GKT+GIIG G IG  ++  AEA    + YY       L   +   ++ EL +    + +  P T ET  +++     A+     +IN  RG  VD   L+
Sbjct:   83 EFYKSSLPEEELIEKIKDVHAIGIRSKTRLTSNVLQHAKNLVCIGCFCIGTNQVDLDYATSRGIAVFNSPFSNSRSVAELVIAEIISLARQLGDRSIELHTGTWNKVAAR-CWEVRGKTLGIIGYGHIGSQLSVLAEAMGLHVLYYDIVTIMALGTARQVSTLDELLNKSDFVTLHVPATPETEKMLSAPQFAAMKDGAYVINASRGTVVDIPSLI 297          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: LDHD_STRP1 (D-lactate dehydrogenase OS=Streptococcus pyogenes serotype M1 GN=ldhD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.835e-11
Identity = 53/205 (25.85%), Postives = 95/205 (46.34%), Query Frame = 1
Query:  187 VGNATAGADAELIDALPK---LEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGK-----TVGIIGLGRIGMAVAKRAEAFSCPI----NYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELL 765
            + NA  G   + I  L K   ++ ++  S  +D  ++    E  + +TN P    + +A+  + ++L ++R +      +R    KK ++       G+     TV IIG GRIG+A AK  + F C +     Y S   K  L YK   SV E   +  ++ +  P T E  H+ N ++  +     +L+N+ RG  ++ ++LL
Sbjct:   48 IANAQIGPLDDAIYPLLKEMGIKQIAQHSASVDMYNLDLATENDIIITNVPSYSPESIAEFTVTIVLNLIRHV----ELIRENV-KKQNFTWGLPIRGRVLGDMTVAIIGTGRIGLATAKIFKGFGCKVVGYDIYQSDAAKAVLDYK--ESVEEAIKDADLVSLHMPPTAENTHLFNSDLFKSFKKGAILMNMARGAVIETQDLL 245          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: FDH_EMENI (Probable formate dehydrogenase OS=Emericella nidulans GN=aciA PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.835e-11
Identity = 49/178 (27.53%), Postives = 84/178 (47.19%), Query Frame = 1
Query:  214 AELIDALPKLEIVSSFSVGLDKVDV--AKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWK-----KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYS----RTE-KPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGP 708
            AE +     L++  +  +G D VD+  A     G+ V          VA+  +  +L ++R    +   +R+G W      K ++ L  K     VG +G+GRIG  V +R + F C  + YY     R E +  +  +   S+ E+ S C ++ + CPL E+TR + N+E+I  + P
Sbjct:   72 AERLAKAKNLKLAVTAGIGSDHVDLDAANKTNGGITVAEVTGSNVVSVAEHVVMTILLLVRNFVPAHDQIRNGDWNVAAVAKNEFDLENK----VVGTVGVGRIGERVLRRLKPFDCKELLYYDYQPLRPEVEKEIGARRVDSLEEMVSQCDVVTINCPLHEKTRGLFNKELISKMKP 245          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: DDH2_SCHPO (2-hydroxyacid dehydrogenase homolog 2 OS=Schizosaccharomyces pombe GN=SPAC186.02c PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.621e-11
Identity = 58/196 (29.59%), Postives = 98/196 (50.00%), Query Frame = 1
Query:  211 DAELIDALPK--LEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLT----TKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKYYPSVVE---LASNCHILVVACPLTEETRHIINREVIDALGPKGV-LINIGRGPHVDERELL 765
            DA+ + AL +  +++V+    G + V++    E  + V + P      V++  +GL+L++ R++  +  YVR    ++ D+ +         GKTVG+IG G+IG  VAK  +  F C +  Y       L+  Y    VE   +      L + CPLT  T HI+N + + AL  KGV ++N  RG  +D + L+
Sbjct:   57 DADTLKALAENGVKLVALRCGGYNNVNLKAASEYKITVVHVPSYSPFAVSEFTVGLLLSLNRKIHRA--YVRV---REDDFNIVGLLGCDIHGKTVGVIGTGKIGSNVAKCFKMGFGCDVLAYDINPDKKLE-NYGVQFVEQNEVLKKADFLCLHCPLTPSTTHIVNSDSL-ALMKKGVTIVNTSRGGLIDTKALV 245          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: LDHD_LACPE (D-lactate dehydrogenase OS=Lactobacillus pentosus PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.953e-11
Identity = 41/178 (23.03%), Postives = 86/178 (48.31%), Query Frame = 1
Query:  250 VSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYK----LTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK--YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELL 765
            +S  +VG+D +DV   K +G+ ++N P    + +A+L++  ++ +LR+    ++     K  K D++    +  +    TVG+IG GRIG A     + F   +  Y       L+ +  Y  ++ EL +   ++ +  P  ++  H++N +    +     ++N  RG  +D  +L+
Sbjct:   73 ISLRNVGVDNLDVPTVKARGLNISNVPAYSPNAIAELSVTQLMQLLRQTPMFNK-----KLAKQDFRWAPDIAKELNTMTVGVIGTGRIGRAAIDIFKGFGAKVIGYDVYRNAELEKEGMYVDTLDELYAQADVITLHVPALKDNYHMLNADAFSKMKDGAYILNFARGTLIDSEDLI 245          
The following BLAST results are available for this feature:
BLAST of DN617491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
LDHD_PEDAC2.005e-1126.04D-lactate dehydrogenase OS=Pediococcus acidilactic... [more]
LDHD_LACDA2.619e-1129.19D-lactate dehydrogenase OS=Lactobacillus delbrueck... [more]
LDHD_ECOLI2.619e-1127.11D-lactate dehydrogenase OS=Escherichia coli (strai... [more]
PDXB_SHESM3.421e-1126.46Erythronate-4-phosphate dehydrogenase OS=Shewanell... [more]
SERA_YEAST5.835e-1124.07D-3-phosphoglycerate dehydrogenase 1 OS=Saccharomy... [more]
LDHD_STRP15.835e-1125.85D-lactate dehydrogenase OS=Streptococcus pyogenes ... [more]
FDH_EMENI5.835e-1127.53Probable formate dehydrogenase OS=Emericella nidul... [more]
DDH2_SCHPO7.621e-1129.592-hydroxyacid dehydrogenase homolog 2 OS=Schizosac... [more]
LDHD_LACPE9.953e-1123.03D-lactate dehydrogenase OS=Lactobacillus pentosus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E11_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617491 ID=DN617491; Name=DN617491; organism=Citrus sinensis; type=EST; length=768bp
GGAAAATCCAACGTGGGTTCATTTTGTGATTTCAGTTGAATGGAGTCAAT
CGGTGTCTTGATGGCCTGTCCCATGAACACGTACTTAGAGCAGGAACTCG
AGAGAAGATTCAATCTTTTCAAGTTCTGGACGGTTTCAGACAAAACCCAG
TTCCTAAAAGCACAACAAAACAACATACGTGCGGTTGTCGGGAACGCGAC
GGCCGGTGCTGACGCTGAACTGATTGATGCTTTACCTAAGCTTGAGATTG
TATCGAGTTTTAGTGTGGGATTGGACAAGGTTGACGTGGCCAAGTGCAAA
GAAAAGGGCGTTAGAGTTACTAACACCCCTGATGTGTTGACTGATGACGT
GGCCGATTTGGCCATTGGGTTGATGTTGGCTGTGTTGAGGAGGTTGTGTG
AGAGCGATAGGTATGTCAGAAGTGGGAAGTGGAAGAAGGGGGATTATAAG
CTGACCACTAAGTTCACTGGAAAAACAGTTGGCATTATTGGGCTAGGAAG
AATTGGCATGGCAGTTGCTAAGAGAGCTGAAGCATTTAGCTGCCCAATCA
ACTACTACTCTAGAACAGAGAAACCAAATTTGAAATACAAATACTACCCT
AGTGTAGTTGAGTTGGCCTCCAACTGTCACATTCTGGTCGTTGCATGCCC
ACTAACGGAAGAGACCCGCCATATCATTAATCGTGAAGTCATTGATGCTT
TGGGACCAAAAGGTGTTCTCATCAACATTGGGAGGGGTCCTCACGTGGAT
GAACGTGAACTGTTGTCT
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