DN617491

Overview
NameDN617491
Unique NameDN617491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2408 contig Csv1_Contig2408:46..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GYAR_AERPE (Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.785e-29
Identity = 74/194 (38.14%), Postives = 111/194 (57.22%), Query Frame = 1
Query:  211 DAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKW---KKGDY---KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELL 765
            D +L+   P+L IV+  +VG D +DV      G+ VTNTP VLT+  A+    L+LA  RR+ E+D +VR G+W   + G +    L  +  GKT+GI+G+GRIG  VA+  +AF   I Y+SR+ K  ++ +    Y S+ +L     IL +  PLT+ETRH+I    +  +    +L+N GRG  VD   L+
Sbjct:   59 DCDLLSQAPRLRIVAQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRWGEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIGKAFGMRIIYHSRSRKREIEKELGAEYRSLEDLLRESDILSIHLPLTDETRHLIGESELKLMKKTAILVNTGRGAIVDTGALV 252          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_ERWCT (Glyoxylate/hydroxypyruvate reductase B OS=Erwinia carotovora subsp. atroseptica GN=ghrB PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.638e-29
Identity = 84/228 (36.84%), Postives = 122/228 (53.51%), Query Frame = 1
Query:  106 RFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGA--DAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG---DYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDEREL 762
            R  L + +TV++   F       +    G   +G   D + +   P+L   S+ SVG D  +V    EKGV + +TP VLT+ VAD  + LMLA  RR+ E    V++G+WK G   D+   T    KT+GI+G+GRIG+AVA+RA   FS P+ Y +R      + ++   +  +  L +    L +  PLT ET H+I RE +  + P  +LINIGRG  VDE  L
Sbjct:   16 RARLDQHFTVTELDAFPALDHPALATAEGIIGSGGKVDKDFLQHAPRLRAASTISVGYDTFNVDALNEKGVILMHTPTVLTETVADTVLALMLASARRVVEVVERVKAGEWKGGVGSDW-FGTDVHHKTIGILGMGRIGLAVAQRAHFGFSMPVLYNARRHHAEAEERFNARHCDLDTLLAESDFLCITLPLTAETHHLIGREQLAKMKPSAILINIGRGAVVDEDAL 242          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_YERE8 (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=ghrB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.104e-29
Identity = 83/236 (35.17%), Postives = 127/236 (53.81%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQ--FLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKYYP---SVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L Q LE+ F +  F  +S   Q   L A Q     ++G+     D   ++  PKL   S+ SVG D  DV    ++G+ + +TP VLT+ VAD  + L+L+  RR+ E    V++G+W+   GD         KT+GI+G+GRIGMA+A+RA   FS P+ Y SR      + ++     S+  L +    L +  P+TE+T H+I  E +  +    +LIN GRGP VDE+ L++
Sbjct:   15 LHQRLEQHFTVNSFEGLSSDNQPELLSALQQ-AEGLIGSG-GKIDQAFLERAPKLRAASTISVGYDNFDVDALSQRGIALMHTPTVLTETVADTMMALVLSSARRVVELAERVKAGEWQDSIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEKRFGARRCSLDTLLAEVDFLCITLPMTEQTYHMIGPEQLAKMKSSAILINAGRGPVVDEQALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_ESCF3 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ghrB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.382e-28
Identity = 83/235 (35.32%), Postives = 126/235 (53.62%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQ-NNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L Q LE  F + +   +S +T    A+   N   ++G++    DA L++ +PKL   S+ SVG D  DV     + V + +TP VLT+ VAD  + L+LA  RR+ E    V++G+W    G     +    KT+GI+G+GRIGMA+A+RA   F+ PI Y +R + P  + ++   Y  +  L      + +  PLTEET H+   E    +    + IN GRGP VDE+ L+S
Sbjct:   15 LLQRLEEHFTVTQVSNLSPQTVEQHAEAFANAEGLLGSSEKVDDA-LLEKMPKLRATSTISVGYDNFDVDALNARKVLLMHTPTVLTETVADTLMALILATSRRVVEVAERVKAGEWTASIGPDWFGSDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRQHPQAEERFNARYCDLDTLLQEADFVCLILPLTEETHHLFGAEQFAKMKSSAIFINAGRGPVVDEKALIS 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_KLEP7 (Glyoxylate/hydroxypyruvate reductase B OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=ghrB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.961e-28
Identity = 78/234 (33.33%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L Q LE  F++ +   +  +T    A+       +  ++   DA L++ +PKL   S+ SVG D  DV     + V + +TP VLT+ VAD  + L+L+  RR+ E    V++G+W K  G     T    KT+GI+G+GRIGMA+A+RA   F  PI Y +R + P  + ++   Y  +  L      + +  PL+EET H+  +     +    + IN GRGP VDE+ L++
Sbjct:   15 LLQRLEEHFSVTQVKNLRPETVSQHAEAFAQAEGLLGSSEKVDAALLEKMPKLRATSTVSVGYDNFDVEALNARRVLLMHTPTVLTETVADTVMALVLSTARRVVEVAERVKAGEWTKSIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFGMPILYNARRQHPQAEERFNARYCDLDTLLQEADFVCLILPLSEETHHLFGQAQFAKMKSSAIFINAGRGPVVDEQALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: TKRA_BACSU (Probable 2-ketogluconate reductase OS=Bacillus subtilis GN=yvcT PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.528e-27
Identity = 76/226 (33.63%), Postives = 120/226 (53.10%), Query Frame = 1
Query:  106 RFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKW--KKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELL 765
            R+ +++  T+     F K ++       G +    + EL++  PKL++VS+ SVG D  D+   KE+GV  T+TP  L D VADLA  L+L+  RR+ E DR+VR+GKW   + +         +T+GIIG+GRIG   A+RA+  F   + Y++R  K   +      Y  +  L      +++  PLT+ET H+I       +    + +NI RG  VDE+ L+
Sbjct:   25 RYEVWQEDTLPSDVLFEKLKEAEGLLTSGTSGPSINRELLEHAPKLKVVSNQSVGYDNFDIEAMKERGVVGTHTPYTLDDTVADLAFSLILSSARRVAELDRFVRAGKWGTVEEEALFGIDVHHQTLGIIGMGRIGEQAARRAKFGFDMEVLYHNRHRKQETEDSIGVKYAELDTLLEQSDFILLITPLTDETYHMIGEREFKLMKNSAIFVNISRGKTVDEKALI 250          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_KLEP3 (Glyoxylate/hydroxypyruvate reductase B OS=Klebsiella pneumoniae (strain 342) GN=ghrB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.607e-27
Identity = 77/234 (32.91%), Postives = 123/234 (52.56%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L Q LE  F++ +   +  +T    A+       +  ++   DA L++ +PKL   S+ SVG D  DV     + V + +TP VLT+ VAD  + L+L+  RR+ E    V++G+W K  G     +    KT+GI+G+GRIGMA+A+RA   F  PI Y +R + P  + ++   Y  +  L      + +  PL+EET H+  +     +    + IN GRGP VDE+ L++
Sbjct:   15 LLQRLEEHFSVTQVKNLRPETVSQHAEAFAQAEGLLGSSEKVDAALLEKMPKLRATSTVSVGYDNFDVEALNARRVLLMHTPTVLTETVADTVMALVLSTARRVVEVAERVKAGEWTKSIGPDWFGSDVHHKTLGIVGMGRIGMALAQRAHFGFGMPILYNARRQHPQAEERFNARYCDLDTLLQEADFVCLILPLSEETHHLFGQAQFAKMKSSAIFINAGRGPVVDEQALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_ENT38 (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sp. (strain 638) GN=ghrB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.405e-27
Identity = 74/233 (31.76%), Postives = 122/233 (52.36%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELL 765
            L++ LE  F + +   ++ +T    A      A +  ++   D  L++ +PKL   S+ SVG D  DV     + + + +TP  LT+ VAD  + L+L+  RR+ E    V++G+W K  G         GKT+GI+G+GRIG+A+A+RA   F+ PI Y +R      + ++   Y  +  L      + +  PLT+ET H+I +   + +    + IN GRGP VDE+ L+
Sbjct:   15 LQKRLEEHFTVTQMKNLNPETVAEHADAFASAAGLLGSSEKVDTALLEKMPKLRATSTISVGYDNFDVDALNTRKILLMHTPYALTETVADTLMALVLSTARRVVEVAERVKAGEWTKSIGPDWFGVDVHGKTLGIVGMGRIGLALAQRAHFGFNMPILYNARRHHSEAEERFEARYCELETLLQEADYVCLILPLTDETHHLIGKAEFEKMKKSAIFINAGRGPVVDEKALI 247          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.586e-27
Identity = 79/244 (32.38%), Postives = 130/244 (53.28%), Query Frame = 1
Query:   40 MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELAS---NCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDEREL 762
            M  + VL+A  +N     ELE    +    T++ + + L A ++   A+V  +      E+I+A P+L+I++   VG+D VDV    ++G+ V N P+  +  VA+ +IGLMLA+ R++  +DR V+ GKW+K  + +  +  GKT+GIIG+GRIG  V  R +AF   I  Y          +   +V +L +      I+ +  PLT ETRH+I+ +    +     ++N  RG  +DE  L
Sbjct:    1 MSRMKVLIADSINEKGISELEEVAEVVVNTTITPE-ELLDAIKD-FDAIVVRSRTKVTREVIEAAPRLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSVKEGKWEKNRF-MGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDIMVYDPYISKEAAEEMGVTVTDLETLLRESDIVTIHVPLTPETRHLISEDEFKLMKDTAFIVNCARGGIIDEDAL 241          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SHIBS (Glyoxylate/hydroxypyruvate reductase B OS=Shigella boydii serotype 4 (strain Sb227) GN=ghrB PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 9.907e-27
Identity = 79/238 (33.19%), Postives = 121/238 (50.84%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGA----DAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L Q L+  F + +   +S +T     +QN           G+    DA L++ +PKL   S+ SVG D  DV     + + + +TP VLT+ VAD  + L+L+  RR+ E    V++G+W    G     T    KT+GI+G+GRIGMA+A+RA   F+ PI Y +R      + ++   Y  +  L      + +  PLT+ET H+   E    + P  + IN GRGP VDE  L++
Sbjct:   15 LLQRLQEHFTVHQVANLSPQT----VEQNAAIFAEAEGLLGSNENVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKPSAIFINAGRGPVVDENALIA 248          
The following BLAST results are available for this feature:
BLAST of DN617491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
GYAR_AERPE2.785e-2938.14Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR P... [more]
GHRB_ERWCT3.638e-2936.84Glyoxylate/hydroxypyruvate reductase B OS=Erwinia ... [more]
GHRB_YERE88.104e-2935.17Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_ESCF31.382e-2835.32Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_KLEP78.961e-2833.33Glyoxylate/hydroxypyruvate reductase B OS=Klebsiel... [more]
TKRA_BACSU1.528e-2733.63Probable 2-ketogluconate reductase OS=Bacillus sub... [more]
GHRB_KLEP32.607e-2732.91Glyoxylate/hydroxypyruvate reductase B OS=Klebsiel... [more]
GHRB_ENT383.405e-2731.76Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
SERA_METTH7.586e-2732.38D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
GHRB_SHIBS9.907e-2733.19Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01E11_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617491 ID=DN617491; Name=DN617491; organism=Citrus sinensis; type=EST; length=768bp
GGAAAATCCAACGTGGGTTCATTTTGTGATTTCAGTTGAATGGAGTCAAT
CGGTGTCTTGATGGCCTGTCCCATGAACACGTACTTAGAGCAGGAACTCG
AGAGAAGATTCAATCTTTTCAAGTTCTGGACGGTTTCAGACAAAACCCAG
TTCCTAAAAGCACAACAAAACAACATACGTGCGGTTGTCGGGAACGCGAC
GGCCGGTGCTGACGCTGAACTGATTGATGCTTTACCTAAGCTTGAGATTG
TATCGAGTTTTAGTGTGGGATTGGACAAGGTTGACGTGGCCAAGTGCAAA
GAAAAGGGCGTTAGAGTTACTAACACCCCTGATGTGTTGACTGATGACGT
GGCCGATTTGGCCATTGGGTTGATGTTGGCTGTGTTGAGGAGGTTGTGTG
AGAGCGATAGGTATGTCAGAAGTGGGAAGTGGAAGAAGGGGGATTATAAG
CTGACCACTAAGTTCACTGGAAAAACAGTTGGCATTATTGGGCTAGGAAG
AATTGGCATGGCAGTTGCTAAGAGAGCTGAAGCATTTAGCTGCCCAATCA
ACTACTACTCTAGAACAGAGAAACCAAATTTGAAATACAAATACTACCCT
AGTGTAGTTGAGTTGGCCTCCAACTGTCACATTCTGGTCGTTGCATGCCC
ACTAACGGAAGAGACCCGCCATATCATTAATCGTGAAGTCATTGATGCTT
TGGGACCAAAAGGTGTTCTCATCAACATTGGGAGGGGTCCTCACGTGGAT
GAACGTGAACTGTTGTCT
back to top