DN617491

Overview
NameDN617491
Unique NameDN617491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2408 contig Csv1_Contig2408:46..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.690e-26
Identity = 65/186 (34.95%), Postives = 103/186 (55.38%), Query Frame = 1
Query:  217 ELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPI----NYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDEREL 762
            ++I+   KL+++    VG+D +DV    EKG+ V N PD  +  VA+L +GLMLA  R + ++   ++ G+W +  +K   +  GKT+G+IGLGRIG  V KRA+AF   I     Y  +    ++  +    + EL      + +  PLT +TRHII RE I  +    +++N  RG  +DE+ L
Sbjct:   56 DVIEKAEKLKVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLMLAAARNIPQATASLKRGEWDRKRFK-GIELYGKTLGVIGLGRIGQQVVKRAKAFGMNIIGYDPYIPKEVAESMGVELVDDINELCKRADFITLHVPLTPKTRHIIGREQIALMKKNAIIVNCARGGLIDEKAL 240          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_ENTAG (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter agglomerans GN=tkrA PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.690e-26
Identity = 72/199 (36.18%), Postives = 112/199 (56.28%), Query Frame = 1
Query:  190 GNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRA-EAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            G++ AG +A       KL   S+ SVG D  DV    ++G+ + +TP VLT+ VAD  + L+L+  RR+ E    V++G+W++  G          K +GI+G+GRIG+A+A+RA   F  PI Y +R      + ++   Y  +  L      L ++ PLTE+T H+I RE +  + P  +LIN GRGP VDE+ L++
Sbjct:   56 GSSAAGENA-------KLRAASTISVGYDNFDVEALNQRGIVLIDTPTVLTETVADTMMALVLSSARRVVEVAERVKAGEWRRSIGPDWFGIDVHHKKMGILGMGRIGLALAQRAHHGFGMPILYNARKHHEEAESRFNAQYCDLDTLLRESDFLCISLPLTEQTHHMIGREQLAKMKPSAILINAGRGPVVDEQALIA 247          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_CITK8 (Glyoxylate/hydroxypyruvate reductase B OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ghrB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.765e-26
Identity = 70/192 (36.46%), Postives = 105/192 (54.69%), Query Frame = 1
Query:  211 DAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            ++ L++ +PKL   S+ SVG D  DVA    + V + +TP VLT+ VAD  + L+L+  RR+ E    V+ G+W K  G     T    KT+GI+G+GRIG+A+A+RA   F+ PI Y +R   P  + ++   Y  +  L      + +  PLTEET H+        +    + IN GRGP VDE  L++
Sbjct:   57 NSALLEKMPKLRAASTVSVGYDNFDVAALNARSVLLMHTPTVLTETVADTVMALVLSTARRVVEVAERVKVGEWTKSIGPDWFGTDVHHKTLGIVGMGRIGLALAQRAHFGFNMPILYNARRHHPEAEERFNARYCDLDTLLQAADFVCLILPLTEETHHLFGAAQFAKMKSSAIFINAGRGPVVDETALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SERP5 (Glyoxylate/hydroxypyruvate reductase B OS=Serratia proteamaculans (strain 568) GN=ghrB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.917e-26
Identity = 76/234 (32.48%), Postives = 120/234 (51.28%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVS-DKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKYYP---SVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELL 765
            L + LE+ F +  F  ++ D    L+        ++G+     D   +   PKL   S+ SVG D  DV       V + +TP VLT+ VAD  + L+LA  RR+ E    V++G+W+   G          KT+GI+G+GRIG+A+A+RA   F  P+ Y +R      + ++      +  L +    + +  PLT+ET H+I+R+ +  +   G+LIN GRGP VDE  L+
Sbjct:   15 LRERLEQHFTVHAFDGLTPDNHDELRQALQQAEGIIGSG-GKIDEAFLQQTPKLRAASTISVGYDNFDVDALNAHNVLLMHTPTVLTETVADTIMSLVLATARRVVEVAERVKAGEWQGSIGADWFGVDVHHKTIGILGMGRIGLALAQRAHFGFGMPVLYNARRTHEEAEQRFNARRCDLDTLLAESDFICITLPLTDETFHMISRDQLAKMKKSGILINAGRGPVVDEAALI 247          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_ECOSM (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.917e-26
Identity = 78/238 (32.77%), Postives = 121/238 (50.84%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGA----DAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L Q L+  F + +   +S +T     +QN           G+    DA L++ +PKL   S+ SVG D  DV     + + + +TP VLT+ VAD  + L+L+  RR+ E    V++G+W    G     T    KT+GI+G+GRIGMA+A+RA+  F+ PI Y +R      + ++   Y  +  L      + +  PLT+ET H+   E    +    + IN GRGP VDE  L++
Sbjct:   15 LLQRLQEHFTVHQVANLSPQT----VEQNAAIFAEAEGLLGSNENVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAQFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_ECOL6 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O6 GN=ghrB PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.422e-26
Identity = 78/238 (32.77%), Postives = 121/238 (50.84%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGA----DAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L Q L+  F + +   +S +T     +QN           G+    DA L++ +PKL   S+ SVG D  DV     + + + +TP VLT+ VAD  + L+L+  RR+ E    V++G+W    G     T    KT+GI+G+GRIGMA+A+RA   F+ PI Y +R      + ++   Y ++  L      + +  PLT+ET H+   E    +    + IN GRGP VDE  L++
Sbjct:   15 LLQRLQEHFTVHQVANLSPQT----VEQNAAIFAEAEGLLGSNENVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCNLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SHISS (Glyoxylate/hydroxypyruvate reductase B OS=Shigella sonnei (strain Ss046) GN=ghrB PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 8.387e-26
Identity = 78/238 (32.77%), Postives = 120/238 (50.42%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGA----DAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L Q L+  F + +   +S +T     +QN           G+    DA L++ +PKL   S+ SVG D  DV     + + + +TP VLT+ VAD  + L+L+  RR+ E    V++G+W    G     T    KT+GI+G+GRIGMA+A+RA   F+ PI Y +R      + ++   Y  +  L      + +  PLT+ET H+   E    +    + IN GRGP VDE  L++
Sbjct:   15 LLQRLQEHFTVHQVANLSPQT----VEQNAAIFAEAEGLLGSNENVDAALLEKMPKLHATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SHIF8 (Glyoxylate/hydroxypyruvate reductase B OS=Shigella flexneri serotype 5b (strain 8401) GN=ghrB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.387e-26
Identity = 76/234 (32.48%), Postives = 118/234 (50.43%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L Q L+  F + +   +S +T    A        +  +    DA L++ +PKL   S+ SVG D  DV     + + + +TP VLT+ VAD  + L+L+  RR+ E    V++G+W    G     T    KT+GI+G+GRIGMA+A+RA   F+ PI Y +R      + ++   Y  +  L      + +  PLT+ET H+   E    +    + IN GRGP VDE  L++
Sbjct:   15 LLQRLQAHFTVHQVANLSPQTVVQNAAIFAEAEGLLGSNENVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SHIB3 (Glyoxylate/hydroxypyruvate reductase B OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ghrB PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.387e-26
Identity = 78/238 (32.77%), Postives = 120/238 (50.42%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGA----DAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L Q L+  F + +   +S +T     +QN           G+    DA L++ +PKL   S+ SVG D  DV     + + + +TP VLT+ VAD  + L+L+  RR+ E    V++G+W    G     T    KT+GI+G+GRIGMA+A+RA   F+ PI Y +R      + ++   Y  +  L      + +  PLT+ET H+   E    +    + IN GRGP VDE  L++
Sbjct:   15 LLQRLQEHFTVHQVANLSPQT----VEQNAAIFAEAEGLLGSNENVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_ECOUT (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain UTI89 / UPEC) GN=ghrB PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 8.387e-26
Identity = 78/238 (32.77%), Postives = 120/238 (50.42%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGA----DAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L Q L+  F + +   +S +T     +QN           G+    DA L++ +PKL   S+ SVG D  DV     + + + +TP VLT+ VAD  + L+L+  RR+ E    V++G+W    G     T    KT+GI+G+GRIGMA+A+RA   F+ PI Y +R      + ++   Y  +  L      + +  PLT+ET H+   E    +    + IN GRGP VDE  L++
Sbjct:   15 LLQRLQEHFTVHQVANLSPQT----VEQNAAIFAEAEGLLGSNENVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIA 248          
The following BLAST results are available for this feature:
BLAST of DN617491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
SERA_METJA1.690e-2634.95D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
GHRB_ENTAG1.690e-2636.18Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
GHRB_CITK83.765e-2636.46Glyoxylate/hydroxypyruvate reductase B OS=Citrobac... [more]
GHRB_SERP54.917e-2632.48Glyoxylate/hydroxypyruvate reductase B OS=Serratia... [more]
GHRB_ECOSM4.917e-2632.77Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECOL66.422e-2632.77Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_SHISS8.387e-2632.77Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
GHRB_SHIF88.387e-2632.48Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
GHRB_SHIB38.387e-2632.77Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
GHRB_ECOUT8.387e-2632.77Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E11_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617491 ID=DN617491; Name=DN617491; organism=Citrus sinensis; type=EST; length=768bp
GGAAAATCCAACGTGGGTTCATTTTGTGATTTCAGTTGAATGGAGTCAAT
CGGTGTCTTGATGGCCTGTCCCATGAACACGTACTTAGAGCAGGAACTCG
AGAGAAGATTCAATCTTTTCAAGTTCTGGACGGTTTCAGACAAAACCCAG
TTCCTAAAAGCACAACAAAACAACATACGTGCGGTTGTCGGGAACGCGAC
GGCCGGTGCTGACGCTGAACTGATTGATGCTTTACCTAAGCTTGAGATTG
TATCGAGTTTTAGTGTGGGATTGGACAAGGTTGACGTGGCCAAGTGCAAA
GAAAAGGGCGTTAGAGTTACTAACACCCCTGATGTGTTGACTGATGACGT
GGCCGATTTGGCCATTGGGTTGATGTTGGCTGTGTTGAGGAGGTTGTGTG
AGAGCGATAGGTATGTCAGAAGTGGGAAGTGGAAGAAGGGGGATTATAAG
CTGACCACTAAGTTCACTGGAAAAACAGTTGGCATTATTGGGCTAGGAAG
AATTGGCATGGCAGTTGCTAAGAGAGCTGAAGCATTTAGCTGCCCAATCA
ACTACTACTCTAGAACAGAGAAACCAAATTTGAAATACAAATACTACCCT
AGTGTAGTTGAGTTGGCCTCCAACTGTCACATTCTGGTCGTTGCATGCCC
ACTAACGGAAGAGACCCGCCATATCATTAATCGTGAAGTCATTGATGCTT
TGGGACCAAAAGGTGTTCTCATCAACATTGGGAGGGGTCCTCACGTGGAT
GAACGTGAACTGTTGTCT
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