DN617491

Overview
NameDN617491
Unique NameDN617491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2408 contig Csv1_Contig2408:46..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: Y2305_STAAM (Putative 2-hydroxyacid dehydrogenase SAV2305 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2305 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.211e-24
Identity = 71/215 (33.02%), Postives = 111/215 (51.63%), Query Frame = 1
Query:  139 DKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRS---GKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELL 765
            DK   +K  +N   A++   +   D ++IDA   L+I++++  G + +D+   +EK + VTNTP   T+  ADL IGL+LAV RR+ E D+  R+     W    ++   + +GKT+GIIGLG IG AVA+RA AF   + Y     K   + +    Y  +  L  N   + +      +  H+I+ E    +     LIN  RGP V E+ L+
Sbjct:   34 DKDTLIKGVKN-ATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFR-GREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTVYLINASRGPIVHEQALV 246          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: Y2098_STAAN (Putative 2-hydroxyacid dehydrogenase SA2098 OS=Staphylococcus aureus (strain N315) GN=SA2098 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.211e-24
Identity = 71/215 (33.02%), Postives = 111/215 (51.63%), Query Frame = 1
Query:  139 DKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRS---GKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELL 765
            DK   +K  +N   A++   +   D ++IDA   L+I++++  G + +D+   +EK + VTNTP   T+  ADL IGL+LAV RR+ E D+  R+     W    ++   + +GKT+GIIGLG IG AVA+RA AF   + Y     K   + +    Y  +  L  N   + +      +  H+I+ E    +     LIN  RGP V E+ L+
Sbjct:   34 DKDTLIKGVKN-ATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFR-GREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTVYLINASRGPIVHEQALV 246          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: Y1888_STAEQ (Putative 2-hydroxyacid dehydrogenase SERP1888 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1888 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.211e-24
Identity = 69/210 (32.86%), Postives = 110/210 (52.38%), Query Frame = 1
Query:  154 LKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRS---GKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINY---YSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELL 765
            LK    +  A++   +   D ++ID+   L+I++++  G + +DV   +++ + VTNTP   T+  ADL IGL+L+V RR+ E D   R+     W    ++   + +GKT+GIIGLG IG AVAKRA AF   + Y   + + EK       Y  +  L  N   + +         H+I+ E  + +     LIN GRGP V+E+ L+
Sbjct:   38 LKKGVEHADALISLLSTSVDKDIIDSANNLKIIANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEGDHLSRTTGFDGWAPLFFR-GREVSGKTIGIIGLGEIGGAVAKRARAFDMDVLYTGPHRKEEKERDIGAKYVDLDTLLKNADFITINAAYNPSLHHMIDTEQFNKMKSTAYLINAGRGPIVNEQSLV 246          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.211e-24
Identity = 75/208 (36.06%), Postives = 108/208 (51.92%), Query Frame = 1
Query:  139 DKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDE 753
            D+T+ L A       +V +AT   DAE++ A PKL+IV+   VGLD VDV     +GV V N P       A+ A+ L+LA  R++ E+D  +R+  WK+  +  T  F GKTVG++GLGRIG  VA R  AF   +  Y     P    +      S  +L +    + V  P T ET  +I++E +    P  +++N  RG  VDE
Sbjct:   33 DRTKLLAAVPEADALLVRSATT-VDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIAEADASLRAHIWKRSSFSGTEIF-GKTVGVVGLGRIGQLVAARIAAFGAHVIAYDPYVAPARAAQLGIELMSFDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDE 238          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SALPC (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella paratyphi C (strain RKS4594) GN=ghrB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.211e-24
Identity = 74/234 (31.62%), Postives = 117/234 (50.00%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L   LE  F + +   +  +T    AQ       +  A+   +  L++ +P L   S+ SVG D V+V     + + + +TP VLT+ VAD  + LMLA  RR+ +    V++G+W +  G          KT+GI+G+GRIGMA+A+RA   F+ P+ Y++R      + ++   Y  +  L      + V  PLT ETRH+        +    + IN GRGP VDE  L++
Sbjct:   15 LLHRLEAHFTVTQVPNLHPETVARHAQAFASAQGLLGASETVNRALLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPTVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SALCH (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella choleraesuis GN=ghrB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.211e-24
Identity = 74/234 (31.62%), Postives = 117/234 (50.00%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L   LE  F + +   +  +T    AQ       +  A+   +  L++ +P L   S+ SVG D V+V     + + + +TP VLT+ VAD  + LMLA  RR+ +    V++G+W +  G          KT+GI+G+GRIGMA+A+RA   F+ P+ Y++R      + ++   Y  +  L      + V  PLT ETRH+        +    + IN GRGP VDE  L++
Sbjct:   15 LLHRLEAHFTVTQVPNLHPETVARHAQAFASAQGLLGASETVNRALLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPTVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SALTY (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella typhimurium GN=ghrB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.582e-24
Identity = 74/234 (31.62%), Postives = 117/234 (50.00%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L   LE  F + +   +  +T    AQ       +  A+   +  L++ +P L   S+ SVG D V+V     + + + +TP VLT+ VAD  + LMLA  RR+ +    V++G+W +  G          KT+GI+G+GRIGMA+A+RA   F+ P+ Y++R      + ++   Y  +  L      + V  PLT ETRH+        +    + IN GRGP VDE  L++
Sbjct:   15 LLHRLEAHFTVTQVPNLHPETVAQHAQAFASAQGLLGASETVNRALLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SALPK (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella paratyphi A (strain AKU_12601) GN=ghrB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.582e-24
Identity = 74/234 (31.62%), Postives = 117/234 (50.00%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L   LE  F + +   +  +T    AQ       +  A+   +  L++ +P L   S+ SVG D V+V     + + + +TP VLT+ VAD  + LMLA  RR+ +    V++G+W +  G          KT+GI+G+GRIGMA+A+RA   F+ P+ Y++R      + ++   Y  +  L      + V  PLT ETRH+        +    + IN GRGP VDE  L++
Sbjct:   15 LLHRLEAHFTVTQVPNLHPETVARHAQAFASAQGLLGASETVNRALLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTTETRHLFGTTQFARMKSSAIFINAGRGPVVDENALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SALPA (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella paratyphi A GN=ghrB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.582e-24
Identity = 74/234 (31.62%), Postives = 117/234 (50.00%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L   LE  F + +   +  +T    AQ       +  A+   +  L++ +P L   S+ SVG D V+V     + + + +TP VLT+ VAD  + LMLA  RR+ +    V++G+W +  G          KT+GI+G+GRIGMA+A+RA   F+ P+ Y++R      + ++   Y  +  L      + V  PLT ETRH+        +    + IN GRGP VDE  L++
Sbjct:   15 LLHRLEAHFTVTQVPNLHPETVARHAQAFASAQGLLGASETVNRALLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTTETRHLFGTTQFARMKSSAIFINAGRGPVVDENALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SALNS (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella newport (strain SL254) GN=ghrB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.582e-24
Identity = 74/234 (31.62%), Postives = 117/234 (50.00%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L   LE  F + +   +  +T    AQ       +  A+   +  L++ +P L   S+ SVG D V+V     + + + +TP VLT+ VAD  + LMLA  RR+ +    V++G+W +  G          KT+GI+G+GRIGMA+A+RA   F+ P+ Y++R      + ++   Y  +  L      + V  PLT ETRH+        +    + IN GRGP VDE  L++
Sbjct:   15 LLHRLEAHFTVTQVPNLHPETVARHAQAFASAQGLLGASETVNRALLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIA 248          
The following BLAST results are available for this feature:
BLAST of DN617491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
Y2305_STAAM1.211e-2433.02Putative 2-hydroxyacid dehydrogenase SAV2305 OS=St... [more]
Y2098_STAAN1.211e-2433.02Putative 2-hydroxyacid dehydrogenase SA2098 OS=Sta... [more]
Y1888_STAEQ1.211e-2432.86Putative 2-hydroxyacid dehydrogenase SERP1888 OS=S... [more]
SERA_MYCLE1.211e-2436.06D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
GHRB_SALPC1.211e-2431.62Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALCH1.211e-2431.62Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALTY1.582e-2431.62Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALPK1.582e-2431.62Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALPA1.582e-2431.62Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALNS1.582e-2431.62Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E11_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617491 ID=DN617491; Name=DN617491; organism=Citrus sinensis; type=EST; length=768bp
GGAAAATCCAACGTGGGTTCATTTTGTGATTTCAGTTGAATGGAGTCAAT
CGGTGTCTTGATGGCCTGTCCCATGAACACGTACTTAGAGCAGGAACTCG
AGAGAAGATTCAATCTTTTCAAGTTCTGGACGGTTTCAGACAAAACCCAG
TTCCTAAAAGCACAACAAAACAACATACGTGCGGTTGTCGGGAACGCGAC
GGCCGGTGCTGACGCTGAACTGATTGATGCTTTACCTAAGCTTGAGATTG
TATCGAGTTTTAGTGTGGGATTGGACAAGGTTGACGTGGCCAAGTGCAAA
GAAAAGGGCGTTAGAGTTACTAACACCCCTGATGTGTTGACTGATGACGT
GGCCGATTTGGCCATTGGGTTGATGTTGGCTGTGTTGAGGAGGTTGTGTG
AGAGCGATAGGTATGTCAGAAGTGGGAAGTGGAAGAAGGGGGATTATAAG
CTGACCACTAAGTTCACTGGAAAAACAGTTGGCATTATTGGGCTAGGAAG
AATTGGCATGGCAGTTGCTAAGAGAGCTGAAGCATTTAGCTGCCCAATCA
ACTACTACTCTAGAACAGAGAAACCAAATTTGAAATACAAATACTACCCT
AGTGTAGTTGAGTTGGCCTCCAACTGTCACATTCTGGTCGTTGCATGCCC
ACTAACGGAAGAGACCCGCCATATCATTAATCGTGAAGTCATTGATGCTT
TGGGACCAAAAGGTGTTCTCATCAACATTGGGAGGGGTCCTCACGTGGAT
GAACGTGAACTGTTGTCT
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