DN617491

Overview
NameDN617491
Unique NameDN617491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2408 contig Csv1_Contig2408:46..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SALHS (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella heidelberg (strain SL476) GN=ghrB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.582e-24
Identity = 74/234 (31.62%), Postives = 117/234 (50.00%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L   LE  F + +   +  +T    AQ       +  A+   +  L++ +P L   S+ SVG D V+V     + + + +TP VLT+ VAD  + LMLA  RR+ +    V++G+W +  G          KT+GI+G+GRIGMA+A+RA   F+ P+ Y++R      + ++   Y  +  L      + V  PLT ETRH+        +    + IN GRGP VDE  L++
Sbjct:   15 LLHRLEAHFTVTQVPNLHPETVAQHAQAFASAQGLLGASETVNRALLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SALEP (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella enteritidis PT4 (strain P125109) GN=ghrB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.582e-24
Identity = 74/234 (31.62%), Postives = 117/234 (50.00%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L   LE  F + +   +  +T    AQ       +  A+   +  L++ +P L   S+ SVG D V+V     + + + +TP VLT+ VAD  + LMLA  RR+ +    V++G+W +  G          KT+GI+G+GRIGMA+A+RA   F+ P+ Y++R      + ++   Y  +  L      + V  PLT ETRH+        +    + IN GRGP VDE  L++
Sbjct:   15 LLHRLEAHFTVTQVPNLHPETVARHAQAFASAQGLLGASETVNRALLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SALDC (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella dublin (strain CT_02021853) GN=ghrB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.582e-24
Identity = 74/234 (31.62%), Postives = 117/234 (50.00%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L   LE  F + +   +  +T    AQ       +  A+   +  L++ +P L   S+ SVG D V+V     + + + +TP VLT+ VAD  + LMLA  RR+ +    V++G+W +  G          KT+GI+G+GRIGMA+A+RA   F+ P+ Y++R      + ++   Y  +  L      + V  PLT ETRH+        +    + IN GRGP VDE  L++
Sbjct:   15 LLHRLEAHFTVTQVPNLHPETVARHAQAFASAQGLLGASETVNRALLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: Y2389_STAAR (Putative 2-hydroxyacid dehydrogenase SAR2389 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2389 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.066e-24
Identity = 70/215 (32.56%), Postives = 111/215 (51.63%), Query Frame = 1
Query:  139 DKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRS---GKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELL 765
            DK   +K  ++   A++   +   D ++IDA   L+I++++  G + +D+   +EK + VTNTP   T+  ADL IGL+LAV RR+ E D+  R+     W    ++   + +GKT+GIIGLG IG AVA+RA AF   + Y     K   + +    Y  +  L  N   + +      +  H+I+ E    +     LIN  RGP V E+ L+
Sbjct:   34 DKDTLIKGVKD-ATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFDGWAPLFFR-GREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQALV 246          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SALPB (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ghrB PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.066e-24
Identity = 66/189 (34.92%), Postives = 102/189 (53.97%), Query Frame = 1
Query:  220 LIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L++ +P L   S+ SVG D V+V     + + + +TP VLT+ VAD  + LMLA  RR+ +    V++G+W +  G          KT+GI+G+GRIGMA+A+RA   F+ P+ Y++R      + ++   Y  +  L      + V  PLT ETRH+        +    + IN GRGP VDE  L++
Sbjct:   60 LLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPTVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTTETRHLFGTTQFARMKSSAIFINAGRGPVVDENALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SALTI (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella typhi GN=ghrB PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.698e-24
Identity = 66/189 (34.92%), Postives = 102/189 (53.97%), Query Frame = 1
Query:  220 LIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L++ +P L   S+ SVG D V+V     + + + +TP VLT+ VAD  + LMLA  RR+ +    V++G+W +  G          KT+GI+G+GRIGMA+A+RA   F+ P+ Y++R      + ++   Y  +  L      + V  PLT ETRH+        +    + IN GRGP VDE  L++
Sbjct:   60 LLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SALG2 (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ghrB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.602e-24
Identity = 73/234 (31.20%), Postives = 116/234 (49.57%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L   LE  F + +   +  +T    AQ       +  A+   +  L++ +P L   S+ SVG D V+V     + + + +TP VLT+ VAD  + LMLA  RR+ +    V++G+W +  G          KT+GI+G+GRIGMA+A+RA   F+ P+ Y++R      + ++   Y  +  L      + V  PLT ETRH+        +    + IN GRGP  DE  L++
Sbjct:   15 LLHRLEAHFTVTQVPNLHPETVARHAQAFASAQGLLGASETVNRALLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVADENALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SALSV (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella schwarzengrund (strain CVM19633) GN=ghrB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.010e-24
Identity = 73/234 (31.20%), Postives = 117/234 (50.00%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L   LE  F + +   +  +T    AQ  +    +  A+   +  L++ +  L   S+ SVG D V+V     + + + +TP VLT+ VAD  + LMLA  RR+ +    V++G+W +  G          KT+GI+G+GRIGMA+A+RA   F+ P+ Y++R      + ++   Y  +  L      + V  PLT ETRH+        +    + IN GRGP VDE  L++
Sbjct:   15 LLHRLEAHFTVTQVPNLHPETVARHAQAFSSAQGLLGASETVNRALLEKMSALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: GHRB_SALA4 (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella agona (strain SL483) GN=ghrB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.010e-24
Identity = 73/234 (31.20%), Postives = 116/234 (49.57%), Query Frame = 1
Query:   85 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELLS 768
            L   LE  F + +   +  +T    AQ       +  A+   +  L++ +P L   S+ SVG D V+V     + + + +TP VLT+ VAD  + LML   RR+ +    V++G+W +  G          KT+GI+G+GRIGMA+A+RA   F+ P+ Y++R      + ++   Y  +  L      + V  PLT ETRH+        +    + IN GRGP VDE  L++
Sbjct:   15 LLHRLEAHFTVTQVPNLHPETVARHAQAFASAQGLLGASETVNRALLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTETVADTVMALMLTTARRVVDVAERVKAGEWTESIGPAWFGIDVHHKTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIA 248          
BLAST of DN617491 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.339e-23
Identity = 74/211 (35.07%), Postives = 108/211 (51.18%), Query Frame = 1
Query:  139 DKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDVAKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDEREL 762
            D+ + L A       +V +AT   DAE++ A PKL+IV+   VGLD VDV     +GV V N P       A+ A+ L+LA  R++  +D  +R   WK+  +  T  F GKTVG++GLGRIG  VA+R  AF   +  Y     P    +      S+ +L +    + V  P T ET  +I++E +    P  +++N  RG  VDE  L
Sbjct:   33 DRDKLLAAVPEADALLVRSATT-VDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIF-GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAAL 241          
The following BLAST results are available for this feature:
BLAST of DN617491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
GHRB_SALHS1.582e-2431.62Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALEP1.582e-2431.62Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALDC1.582e-2431.62Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
Y2389_STAAR2.066e-2432.56Putative 2-hydroxyacid dehydrogenase SAR2389 OS=St... [more]
GHRB_SALPB2.066e-2434.92Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALTI2.698e-2434.92Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALG24.602e-2431.20Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALSV6.010e-2431.20Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALA46.010e-2431.20Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
SERA_MYCTU1.339e-2335.07D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01E11_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617491 ID=DN617491; Name=DN617491; organism=Citrus sinensis; type=EST; length=768bp
GGAAAATCCAACGTGGGTTCATTTTGTGATTTCAGTTGAATGGAGTCAAT
CGGTGTCTTGATGGCCTGTCCCATGAACACGTACTTAGAGCAGGAACTCG
AGAGAAGATTCAATCTTTTCAAGTTCTGGACGGTTTCAGACAAAACCCAG
TTCCTAAAAGCACAACAAAACAACATACGTGCGGTTGTCGGGAACGCGAC
GGCCGGTGCTGACGCTGAACTGATTGATGCTTTACCTAAGCTTGAGATTG
TATCGAGTTTTAGTGTGGGATTGGACAAGGTTGACGTGGCCAAGTGCAAA
GAAAAGGGCGTTAGAGTTACTAACACCCCTGATGTGTTGACTGATGACGT
GGCCGATTTGGCCATTGGGTTGATGTTGGCTGTGTTGAGGAGGTTGTGTG
AGAGCGATAGGTATGTCAGAAGTGGGAAGTGGAAGAAGGGGGATTATAAG
CTGACCACTAAGTTCACTGGAAAAACAGTTGGCATTATTGGGCTAGGAAG
AATTGGCATGGCAGTTGCTAAGAGAGCTGAAGCATTTAGCTGCCCAATCA
ACTACTACTCTAGAACAGAGAAACCAAATTTGAAATACAAATACTACCCT
AGTGTAGTTGAGTTGGCCTCCAACTGTCACATTCTGGTCGTTGCATGCCC
ACTAACGGAAGAGACCCGCCATATCATTAATCGTGAAGTCATTGATGCTT
TGGGACCAAAAGGTGTTCTCATCAACATTGGGAGGGGTCCTCACGTGGAT
GAACGTGAACTGTTGTCT
back to top