DN617490

Overview
NameDN617490
Unique NameDN617490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2408 contig Csv1_Contig2408:713..1317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_YERP3 (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ghrB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.613e-16
Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+I RE +  +    +LIN GRGP VDE+ L++AL +G +  AGLDVFE EP  V   L  L NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSPLLTLRNVVAVPHIGSATHETRYNMAACAVDNL 305          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ERWCT (Glyoxylate/hydroxypyruvate reductase B OS=Erwinia carotovora subsp. atroseptica GN=ghrB PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.469e-15
Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = -3
Query:  331 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 603
            H+I RE +  + P  +LINIGRG  VDE  L  ALV+G +  AGLDVF  EP  V   L  L NVV +PH+GS T ETR  MA   + NL A
Sbjct:  212 HLIGREQLAKMKPSAILINIGRGAVVDEDALTEALVKGTIQAAGLDVFVKEPLPVDSPLLDLPNVVALPHIGSATHETRYDMAACAVDNLIA 303          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GYAR_KORCO (Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.292e-15
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = -3
Query:  331 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEE-LFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 603
            H+I  E +  +    +L+N  RG  VD++ L  AL EG + GAGLDVFE EP  P++ L  LENVVL PH  S + ETR  MA++V  NL A
Sbjct:  217 HMIGEEQLRRMKRTAILVNTSRGKVVDQKALYKALKEGWIAGAGLDVFEQEPIPPDDPLLKLENVVLAPHAASASHETRSRMAEMVAENLIA 308          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SHIBS (Glyoxylate/hydroxypyruvate reductase B OS=Shigella boydii serotype 4 (strain Sb227) GN=ghrB PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.244e-14
Identity = 42/90 (46.67%), Postives = 53/90 (58.89%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    + P  + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKPSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ESCF3 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ghrB PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.244e-14
Identity = 43/92 (46.74%), Postives = 54/92 (58.70%), Query Frame = -3
Query:  331 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 603
            H+   E    +    + IN GRGP VDE+ L+SAL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL A
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDEKALISALQKGEIHAAGLDVFEREPLPVDSPLLAMPNVVALPHIGSATHETRYNMAACAVDNLIA 307          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GYAR_THEPD (Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.624e-14
Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = -3
Query:  331 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEE-LFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 603
            H+IN E +  +     LIN  RGP VD   L+ AL EG + GA LDVFE EP  P   L   +NVVL PH+ S T+E R+ MA+L   NL A
Sbjct:  220 HLINEERLRKMKKTAYLINTARGPVVDTEALVKALKEGWIAGAALDVFEQEPLPPNHPLTKFDNVVLAPHIASATIEARQRMAELAARNLIA 311          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ENT38 (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sp. (strain 638) GN=ghrB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.122e-14
Identity = 41/90 (45.56%), Postives = 54/90 (60.00%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+I +   + +    + IN GRGP VDE+ L+ AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLIGKAEFEKMKKSAIFINAGRGPVVDEKALIEALQKGEIHAAGLDVFEQEPLPVDSPLLTMSNVVSLPHIGSATHETRYNMAATAVDNL 305          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_YERE8 (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=ghrB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.771e-14
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = -3
Query:  331 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 603
            H+I  E +  +    +LIN GRGP VDE+ L++AL +G +  AGLDVF  EP  V   L  L NVV +PH+GS T ETR  MA   + NL A
Sbjct:  216 HMIGPEQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFAQEPLPVESPLLKLPNVVAVPHIGSATHETRYNMAACAVDNLIA 307          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECOLC (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.173e-14
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATYETRYGMAACAVDNL 305          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECOLU (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.062e-14
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFGKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305          
The following BLAST results are available for this feature:
BLAST of DN617490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
GHRB_YERP38.613e-1650.00Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_ERWCT1.469e-1551.09Glyoxylate/hydroxypyruvate reductase B OS=Erwinia ... [more]
GYAR_KORCO7.292e-1547.83Glyoxylate reductase OS=Korarchaeum cryptofilum (s... [more]
GHRB_SHIBS1.244e-1446.67Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
GHRB_ESCF31.244e-1446.74Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GYAR_THEPD1.624e-1447.83Glyoxylate reductase OS=Thermofilum pendens (strai... [more]
GHRB_ENT382.122e-1445.56Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
GHRB_YERE82.771e-1447.83Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_ECOLC6.173e-1445.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECOLU8.062e-1445.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617490 ID=DN617490; Name=DN617490; organism=Citrus sinensis; type=EST; length=605bp
TTTTTTTAATAATATTTAACTAATTCTACTCACAACTACTTAGTTCAATA
GTACAACTAACATCAATCATTTTAGAAGTATCCGTGATGTCAAATCAACA
TCATATGCAACTGCTGCAATTTAAGAATTTAATTAAAACATGTTGCTGAA
GATCTTAAAGTAATTGGCTAAGGCTTCGGGACAAATTGTACCAGGGCCTT
AAAACAATGTTCTTTAGATAAAACATACTTAAGTAGCAGCAGCAGGATGG
AGCCTTCAATCGGTCTTAAACTTGCATCTTTCATGAAACAATCAAACTAC
TGGAGTAAGCAGCGGTTTGTTCAGAAAATGAGCTTCCAAATTCCCAAGTA
CAAGGTCAGCCATGGTTTTGCGGGTTTCCACTGTGCCACTTCCTACATGT
GGCATAAGGACCACATTTTCTAGACCAAAGAGCTCCTCAGGTACATGAGG
CTCATTTTCAAACACATCGAGCCCAGCTCCGCCTAAACGGCCTTCAACCA
GTGCAGACAACAGTTCACGTTCATCCACGTGAGGACCCCTCCCAATGTTG
ATGAGAACACCTTTTGGTCCCAAAGCATCAATGACTTCACGATTAATGAT
ATGGC
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