DN617490

Overview
NameDN617490
Unique NameDN617490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECOL6 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O6 GN=ghrB PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECOK1 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O1:K1 / APEC GN=ghrB PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECOHS (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O9:H4 (strain HS) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECODH (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain K12 / DH10B) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECOBW (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain K12 / BW2952) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECO8A (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O8 (strain IAI1) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECO81 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O81 (strain ED1a) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECO7I (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECO5E (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_ECO57 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O157:H7 GN=tkrA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.053e-13
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = -3 
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+   E    +    + IN GRGP VDE  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  216 HLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
The following BLAST results are available for this feature:
BLAST of DN617490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
GHRB_ECOL61.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECOK11.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECOHS1.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECODH1.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECOBW1.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO8A1.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO811.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO7I1.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO5E1.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO571.053e-1345.56Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01E11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617490 ID=DN617490; Name=DN617490; organism=Citrus sinensis; type=EST; length=605bp
TTTTTTTAATAATATTTAACTAATTCTACTCACAACTACTTAGTTCAATA
GTACAACTAACATCAATCATTTTAGAAGTATCCGTGATGTCAAATCAACA
TCATATGCAACTGCTGCAATTTAAGAATTTAATTAAAACATGTTGCTGAA
GATCTTAAAGTAATTGGCTAAGGCTTCGGGACAAATTGTACCAGGGCCTT
AAAACAATGTTCTTTAGATAAAACATACTTAAGTAGCAGCAGCAGGATGG
AGCCTTCAATCGGTCTTAAACTTGCATCTTTCATGAAACAATCAAACTAC
TGGAGTAAGCAGCGGTTTGTTCAGAAAATGAGCTTCCAAATTCCCAAGTA
CAAGGTCAGCCATGGTTTTGCGGGTTTCCACTGTGCCACTTCCTACATGT
GGCATAAGGACCACATTTTCTAGACCAAAGAGCTCCTCAGGTACATGAGG
CTCATTTTCAAACACATCGAGCCCAGCTCCGCCTAAACGGCCTTCAACCA
GTGCAGACAACAGTTCACGTTCATCCACGTGAGGACCCCTCCCAATGTTG
ATGAGAACACCTTTTGGTCCCAAAGCATCAATGACTTCACGATTAATGAT
ATGGC
back to top