DN617490

Overview
NameDN617490
Unique NameDN617490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2408 contig Csv1_Contig2408:713..1317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: Y2178_STAAB (Putative 2-hydroxyacid dehydrogenase SAB2178 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB2178 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = -3
Query:  349 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLV 603
            H+I+ E    +     LIN  RGP V E+ L+ AL +  + GA LDV+E EP + ++L  L NVVL PH+G+ T E R  M+ +V
Sbjct:  215 HLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARDMMSKIV 299          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: Y1879_STAES (Putative 2-hydroxyacid dehydrogenase SE_1879 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1879 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = -3
Query:  349 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLV 603
            H+I+ E  + +     LIN GRGP V+E+ L+ AL    + GA LDV+E EP + + L   +NVVL PH+G+ T E R  MA +V
Sbjct:  215 HMIDTEQFNKMKSTAYLINAGRGPIVNEQSLVEALDNKVIEGAALDVYEFEPEITDALKSFKNVVLTPHIGNATFEARDMMAKIV 299          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SALTY (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella typhimurium GN=ghrB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+        +    + IN GRGP VDE  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  216 HLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SALTI (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella typhi GN=ghrB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+        +    + IN GRGP VDE  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  216 HLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SALSV (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella schwarzengrund (strain CVM19633) GN=ghrB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+        +    + IN GRGP VDE  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  216 HLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SALPC (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella paratyphi C (strain RKS4594) GN=ghrB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+        +    + IN GRGP VDE  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  216 HLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SALNS (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella newport (strain SL254) GN=ghrB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+        +    + IN GRGP VDE  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  216 HLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SALHS (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella heidelberg (strain SL476) GN=ghrB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+        +    + IN GRGP VDE  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  216 HLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SALEP (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella enteritidis PT4 (strain P125109) GN=ghrB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+        +    + IN GRGP VDE  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  216 HLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305          
BLAST of DN617490 vs. ExPASy Swiss-Prot
Match: GHRB_SALDC (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella dublin (strain CT_02021853) GN=ghrB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.520e-12
Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = -3
Query:  337 HIINREVIDALGPKGVLINIGRGPHVDERELLSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNL 603
            H+        +    + IN GRGP VDE  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  216 HLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305          
The following BLAST results are available for this feature:
BLAST of DN617490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
Y2178_STAAB1.520e-1242.35Putative 2-hydroxyacid dehydrogenase SAB2178 OS=St... [more]
Y1879_STAES1.520e-1243.53Putative 2-hydroxyacid dehydrogenase SE_1879 OS=St... [more]
GHRB_SALTY1.520e-1243.33Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALTI1.520e-1243.33Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALSV1.520e-1243.33Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALPC1.520e-1243.33Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALNS1.520e-1243.33Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALHS1.520e-1243.33Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALEP1.520e-1243.33Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALDC1.520e-1243.33Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617490 ID=DN617490; Name=DN617490; organism=Citrus sinensis; type=EST; length=605bp
TTTTTTTAATAATATTTAACTAATTCTACTCACAACTACTTAGTTCAATA
GTACAACTAACATCAATCATTTTAGAAGTATCCGTGATGTCAAATCAACA
TCATATGCAACTGCTGCAATTTAAGAATTTAATTAAAACATGTTGCTGAA
GATCTTAAAGTAATTGGCTAAGGCTTCGGGACAAATTGTACCAGGGCCTT
AAAACAATGTTCTTTAGATAAAACATACTTAAGTAGCAGCAGCAGGATGG
AGCCTTCAATCGGTCTTAAACTTGCATCTTTCATGAAACAATCAAACTAC
TGGAGTAAGCAGCGGTTTGTTCAGAAAATGAGCTTCCAAATTCCCAAGTA
CAAGGTCAGCCATGGTTTTGCGGGTTTCCACTGTGCCACTTCCTACATGT
GGCATAAGGACCACATTTTCTAGACCAAAGAGCTCCTCAGGTACATGAGG
CTCATTTTCAAACACATCGAGCCCAGCTCCGCCTAAACGGCCTTCAACCA
GTGCAGACAACAGTTCACGTTCATCCACGTGAGGACCCCTCCCAATGTTG
ATGAGAACACCTTTTGGTCCCAAAGCATCAATGACTTCACGATTAATGAT
ATGGC
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