DN617483

Overview
NameDN617483
Unique NameDN617483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617483_ssr144 microsatellite DN617483_ssr144:144..159. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10947 contig Csv1_Contig10947:62..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK3_ATRNU (S-adenosylmethionine synthetase 3 OS=Atriplex nummularia GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 2.500e-87
Identity = 160/190 (84.21%), Postives = 171/190 (90.00%), Query Frame = -3 
Query:  253 DEIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKLQA 822
            DEIAADLK+HVIKPVIP+KYLD+KTIFHL PSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYI RQAAKSIVA+GLARRCIVQ+SYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE+FDFRPGMI+INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEK QA
Sbjct:  208 DEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVAAGLARRCIVQISYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKESFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396
[Close]
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK4_ATRNU (S-adenosylmethionine synthetase 4 OS=Atriplex nummularia GN=SAMS4 PE=1 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 3.265e-87
Identity = 160/190 (84.21%), Postives = 170/190 (89.47%), Query Frame = -3 
Query:  253 DEIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKLQA 822
            DEIAADLK+HVIKPVIP+KYLD+KTIFHL PSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYI RQAAKSIVA+GLARRCIVQ+SYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE FDFRPGMI+INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEK QA
Sbjct:  208 DEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVAAGLARRCIVQISYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396
[Close]
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK2_ATRNU (S-adenosylmethionine synthetase 2 OS=Atriplex nummularia GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 3.265e-87
Identity = 160/190 (84.21%), Postives = 170/190 (89.47%), Query Frame = -3 
Query:  253 DEIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKLQA 822
            DEIAADLK+HVIKPVIP+KYLD+KTIFHL PSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYI RQAAKSIVA+GLARRCIVQ+SYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE FDFRPGMI+INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEK QA
Sbjct:  208 DEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVAAGLARRCIVQISYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396
[Close]
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK1_ATRNU (S-adenosylmethionine synthetase 1 OS=Atriplex nummularia GN=SAMS1 PE=1 SV=2)

HSP 1 Score: 321.627 bits (823), Expect = 3.265e-87
Identity = 160/190 (84.21%), Postives = 170/190 (89.47%), Query Frame = -3 
Query:  253 DEIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKLQA 822
            DEIAADLK+HVIKPVIP+KYLD+KTIFHL PSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYI RQAAKSIVA+GLARRCIVQ+SYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE FDFRPGMI+INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEK QA
Sbjct:  208 DEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVAAGLARRCIVQISYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396
[Close]
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK_CAMSI (S-adenosylmethionine synthetase OS=Camellia sinensis GN=SAM PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 7.273e-87
Identity = 158/178 (88.76%), Postives = 164/178 (92.13%), Query Frame = -3 
Query:  289 DEIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 822
            DEIAADLK+HVIKPVIPDKYLD+KTIFHL PSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE+FDFRPGMI+INLDLKRGGN RFLKTAAYGHFGRDDPDFTWE
Sbjct:  204 DEIAADLKEHVIKPVIPDKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKESFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWE 381
[Close]
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK1_PEA (S-adenosylmethionine synthetase 1 (Fragment) OS=Pisum sativum GN=SAMS1 PE=2 SV=2)

HSP 1 Score: 320.472 bits (820), Expect = 7.273e-87
Identity = 159/187 (85.03%), Postives = 166/187 (88.77%), Query Frame = -3 
Query:  262 DEIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEK 822
            DEIAADLK+HVIKPVIP+KYLD KTI HL PSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDR GAYIVRQAAKSIVASGLARR IVQ+  AIGVPEPLSVFVD+YGTGKIPD+EILKIVKE FDFRPGMISINLDL RGGNGRFLKTAAYGHFGR+DPDFTWE+VKPLKWEK
Sbjct:  179 DEIAADLKEHVIKPVIPEKYLDSKTICHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRRGAYIVRQAAKSIVASGLARRAIVQLLRAIGVPEPLSVFVDTYGTGKIPDREILKIVKETFDFRPGMISINLDLLRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 365
[Close]
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK2_HORVU (S-adenosylmethionine synthetase 2 OS=Hordeum vulgare GN=SAM2 PE=2 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 9.499e-87
Identity = 158/190 (83.16%), Postives = 169/190 (88.95%), Query Frame = -3 
Query:  253 DEIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKLQA 822
            DEIAADLK+HVIKPVIP KYLD+ TIFHL PSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYI RQAAKSI+ASGLARRCIVQ+SYAIGVPEPLSVFVDSYGTGKIPD+EILK+VKENFDFRPGMISINLDLK+GG  RF+KTAAYGHFGRDD DFTWE+VKPLK++K  A
Sbjct:  206 DEIAADLKEHVIKPVIPGKYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIIASGLARRCIVQISYAIGVPEPLSVFVDSYGTGKIPDREILKLVKENFDFRPGMISINLDLKKGGK-RFIKTAAYGHFGRDDADFTWEVVKPLKFDKASA 394
[Close]
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK1_DAUCA (S-adenosylmethionine synthetase 1 OS=Daucus carota GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.241e-86
Identity = 169/238 (71.01%), Postives = 174/238 (73.11%), Query Frame = -3 
Query:  253 DEIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSY------------------------------------------------GTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKLQA 822
            DEIAADLK+HVIKP+IP KYLD+KTIFHL PSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSY                                                GTGKIPD+EILKIVKE FDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE+VKPLKWEK QA
Sbjct:  204 DEIAADLKEHVIKPIIPAKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDREILQIVKETFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGTGKIPDREILKIVKETFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 441
[Close]
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK1_HORVU (S-adenosylmethionine synthetase 1 OS=Hordeum vulgare GN=SAM1 PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.116e-86
Identity = 157/190 (82.63%), Postives = 169/190 (88.95%), Query Frame = -3 
Query:  253 DEIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKLQA 822
            DEIAADLK+HVIKPVIP KYLD+ TIFHL PSGRFVIGGPHGDAGLT RKIIIDTY            GKDPTKVDRSGAYI RQAAKSI+ASGLARRCIVQ+SYAIGVPEPLSVFVDSYGTGKIPD+EILK+VKENFDFRPGMI+INLDLK+GGN RF+KTAAYGHFGRDD DFTWE+VKPLK++K  A
Sbjct:  206 DEIAADLKEHVIKPVIPGKYLDENTIFHLNPSGRFVIGGPHGDAGLTARKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIIASGLARRCIVQISYAIGVPEPLSVFVDSYGTGKIPDREILKLVKENFDFRPGMITINLDLKKGGN-RFIKTAAYGHFGRDDADFTWEVVKPLKFDKASA 394
[Close]
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK2_DIACA (S-adenosylmethionine synthetase 2 OS=Dianthus caryophyllus GN=SAM2 PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 8.042e-86
Identity = 157/190 (82.63%), Postives = 167/190 (87.89%), Query Frame = -3 
Query:  253 DEIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKLQA 822
            DEIAADLK+HVIKPVIP+KYLD+ TIFHL PSGRFVIGGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYI RQAAKSIVASGLARRCIVQ+SYAIGVPEPLSVFVD+YGTGKI D+EILKIVKENFDFRPGMI+I LDLK+GGN R+LKTAAYGHFGR+DPDFTWE  K LKWEK QA
Sbjct:  208 DEIAADLKEHVIKPVIPEKYLDENTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSRKDPTKVDRSGAYIARQAAKSIVASGLARRCIVQISYAIGVPEPLSVFVDTYGTGKIHDREILKIVKENFDFRPGMIAIALDLKKGGN-RYLKTAAYGHFGREDPDFTWEAAKTLKWEKPQA 396
The following BLAST results are available for this feature:
BLAST of DN617483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK3_ATRNU2.500e-8784.21S-adenosylmethionine synthetase 3 OS=Atriplex numm... [more]
METK4_ATRNU3.265e-8784.21S-adenosylmethionine synthetase 4 OS=Atriplex numm... [more]
METK2_ATRNU3.265e-8784.21S-adenosylmethionine synthetase 2 OS=Atriplex numm... [more]
METK1_ATRNU3.265e-8784.21S-adenosylmethionine synthetase 1 OS=Atriplex numm... [more]
METK_CAMSI7.273e-8788.76S-adenosylmethionine synthetase OS=Camellia sinens... [more]
METK1_PEA7.273e-8785.03S-adenosylmethionine synthetase 1 (Fragment) OS=Pi... [more]
METK2_HORVU9.499e-8783.16S-adenosylmethionine synthetase 2 OS=Hordeum vulga... [more]
METK1_DAUCA1.241e-8671.01S-adenosylmethionine synthetase 1 OS=Daucus carota... [more]
METK1_HORVU2.116e-8682.63S-adenosylmethionine synthetase 1 OS=Hordeum vulga... [more]
METK2_DIACA8.042e-8682.63S-adenosylmethionine synthetase 2 OS=Dianthus cary... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617483 ID=DN617483; Name=DN617483; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTTCAACTCAAAGATCTGCTCATTCTTGTTTTATTCATCAATAAA
ATTTCAGAACAATTCATATTCGCCTCTCAATTCATTATGCCTTGGATTGA
GAATCCATTAAACATATTTATTAAAAAAAAAAAAGGAAAAGAAAAAGAAA
GAAAGAAAGAAAACATTCATGTAACTGAAACAGAAGTAAAAAAGAAAAGT
AGACATATATAAGCACCAATGAGAGGCCAGCAGCTCATCCTTGATTAGTT
TAAGCTTGAAGTTTCTCCCACTTGAGTGGCTTAACAATCTCCCAAGTGAA
ATCAGGATCATCTCTGCCAAAGTGCCCATAAGCGGCAGTCTTCAAGAACC
TGCCGTTGCCACCCCTCTTGAGATCAAGATTAATAGAAATCATCCCAGGC
CTAAAATCAAAATTCTCCTTCACAATCTTCAAAATTTCCTTGTCAGGGAT
CTTCCCAGTCCCATAACTATCAACAAAAACTGACAAAGGCTCGGGCACAC
CAATAGCGTAAGAAACCTGAACAATGCATCTCCTGGCAAGCCCGCTTGCC
ACAATACTCTTAGCAGCTTGCCTTACAATGTAAGCACCGCTTCTATCAAC
CTTGGTAGGATCTTTCCCTGAGAAAGCCCCACCACCGTGTGCCCCCCAGC
CACCATAAGTATCAATAATAATCTTCCGGCCGGTGAGCCCAGCATCACCG
TGAGGGCCACCAATCACAAAACGGCCAGATGGGGTAAGATGGAAAATAGT
TTTGTCATCCAAGTACTTGTCAGGAATCACAGGCTTGATCACATGTTGCT
TGAGATCTGCAGCAATCTCATCAT
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