DN617483

Overview
NameDN617483
Unique NameDN617483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617483_ssr144 microsatellite DN617483_ssr144:144..159. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10947 contig Csv1_Contig10947:62..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK_ACACA (S-adenosylmethionine synthetase OS=Acanthamoeba castellanii GN=metK PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 8.399e-51
Identity = 111/187 (59.36%), Postives = 127/187 (67.91%), Query Frame = -3
Query:  268 DEIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGT--GKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKW 822
            +EI   L + VIKP IP   LD +TIFHL PSGRFVIGGP G+AGLTG KIIIDTY            GKDP+KVDRS AY  R  AKS+VA GLA R +VQVSYAIGV  PLSVFVDSYGT  G   D+++L I K NFD RPG I  +L L+R     + KTA +GHFGR+DPDF WE  K L +
Sbjct:  205 EEIRKRLMEEVIKPSIPAHLLDGETIFHLNPSGRFVIGGPQGEAGLTGGKIIIDTYGGWGAHGGGAFSGKDPSKVDRSAAYAARWIAKSLVARGLANRALVQVSYAIGVSHPLSVFVDSYGTAQGGRTDEDLLAISKSNFDLRPGKIINDLQLRR---PIYEKTAYHGHFGRNDPDFLWEAPKKLNF 388          
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK_CALS8 (S-adenosylmethionine synthetase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=metK PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.192e-50
Identity = 101/177 (57.06%), Postives = 126/177 (71.19%), Query Frame = -3
Query:  289 EIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 819
            +I AD+ +HVIKP+IP+  LD  T  ++ P+GRFVIGGP GD+GLTGRKII+DTY            GKDPTKVDRS  Y  R  AK+IVA+GLA++C VQ+SYAIGV  PLS+ VD++GTGKI D++I +IVK  FD RP  I  +LDL+R     + K AAYGHFGR+D D  WE
Sbjct:  208 QIEADVIEHVIKPIIPEGMLDKNTKIYINPTGRFVIGGPQGDSGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSATYAARYVAKNIVAAGLAKKCEVQLSYAIGVARPLSIRVDTFGTGKIDDEKIAEIVKRVFDLRPAAIIRDLDLRR---PIYKKVAAYGHFGREDLDLPWE 381          
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK_GEOTN (S-adenosylmethionine synthetase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=metK PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.444e-50
Identity = 96/178 (53.93%), Postives = 127/178 (71.35%), Query Frame = -3
Query:  289 DEIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 822
            D+I  D+K+HVIKP++P + LD+ T + + P+GRFVIGGP GDAGLTGRKII+DTY            GKDPTKVDRS AY  R  AK+IVA+GLA +C VQ++YAIGV  P+S+ +D++GTGK+ +  ++++V+ NFD RP  I   LDL+R     + +TAAYGHFGR D D  WE
Sbjct:  211 DQIERDMKEHVIKPIVPAELLDENTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADKCEVQLAYAIGVARPVSISIDTFGTGKVSEDVLIEVVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHFGRTDVDLPWE 385          
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK_CLOPS (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.444e-50
Identity = 100/178 (56.18%), Postives = 129/178 (72.47%), Query Frame = -3
Query:  289 DEIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 822
            ++I ADL +HVIK VIP + LD+ T +++ P+GRFVIGGP GDAGLTGRKII+DTY            GKDPTKVDRS AY  R  AK++VA+G+A +  VQV+YAIGV +P+S+ VD++GTGKI D+EI+ I+ + FD RPG I  +LDL+R     + +TAAYGHFGR D D  WE
Sbjct:  205 EQIQADLMEHVIKAVIPAELLDENTKYYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYGRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGIADKLEVQVAYAIGVAKPVSIIVDTFGTGKISDEEIVNIINKVFDLRPGAIIRDLDLRR---PIYRQTAAYGHFGRTDLDLPWE 379          
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK_CLOP1 (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.444e-50
Identity = 100/178 (56.18%), Postives = 129/178 (72.47%), Query Frame = -3
Query:  289 DEIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 822
            ++I ADL +HVIK VIP + LD+ T +++ P+GRFVIGGP GDAGLTGRKII+DTY            GKDPTKVDRS AY  R  AK++VA+G+A +  VQV+YAIGV +P+S+ VD++GTGKI D+EI+ I+ + FD RPG I  +LDL+R     + +TAAYGHFGR D D  WE
Sbjct:  205 EQIQADLMEHVIKAVIPAELLDENTKYYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYGRHGGGAFSGKDPTKVDRSAAYAARWVAKNLVAAGIADKLEVQVAYAIGVAKPVSIIVDTFGTGKISDEEIVNIINKVFDLRPGAIIRDLDLRR---PIYRQTAAYGHFGRTDLDLPWE 379          
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK_CLOCE (S-adenosylmethionine synthetase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=metK PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.110e-50
Identity = 98/178 (55.06%), Postives = 129/178 (72.47%), Query Frame = -3
Query:  289 DEIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 822
            D I  D+ +HVI PVIP + LD+ T + + P+GRFV+GGP GD+GLTGRKII+DTY            GKDPTKVDRS AY  R  AK+IVASG+AR+C VQ++YAIGV +P+SV VD++GT  IP+++I ++V ++FD RP  I   L+L+R     + KTAAYGHFGRDD +F+WE
Sbjct:  208 DTIEKDIMEHVIIPVIPRELLDEGTKYFINPTGRFVVGGPQGDSGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVASGIARKCEVQLAYAIGVAKPVSVLVDTFGTAVIPEEKISELVNKHFDLRPAAIINKLNLRR---PIYRKTAAYGHFGRDDAEFSWE 382          
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK_ANATD (S-adenosylmethionine synthetase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=metK PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.213e-49
Identity = 102/177 (57.63%), Postives = 125/177 (70.62%), Query Frame = -3
Query:  289 EIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 819
            +I AD+ +HVIKPVIP+  LD  T   + P+GRFVIGGP GD+GLTGRKII+DTY            GKDPTKVDRS  Y  R  AK+IVASGLA++C VQVSYAIGV  PLS+ VD++GTGKI D++I +IVK  FD RP  I  +L+L+R     + + AAYGHFGR+D D  WE
Sbjct:  208 QIEADVIEHVIKPVIPEGMLDKNTKIFINPTGRFVIGGPQGDSGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSATYAARYVAKNIVASGLAKKCEVQVSYAIGVARPLSIRVDTFGTGKISDEKIAEIVKRVFDLRPAAIIRDLNLRR---PIYKQVAAYGHFGREDLDLPWE 381          
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK_GEOSW (S-adenosylmethionine synthetase OS=Geobacillus sp. (strain WCH70) GN=metK PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.584e-49
Identity = 98/190 (51.58%), Postives = 131/190 (68.95%), Query Frame = -3
Query:  253 DEIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKLQA 822
            ++I  D+K+HVIKP++P + +D+ T + + P+GRFVIGGP GDAGLTGRKII+DTY            GKDPTKVDRS AY  R  AK+IVASGLA +C VQ++YAIGV  P+S+ +D++GTGK+ +  ++++V+ NFD RP  I   LDL+R     + +TAAYGHFGR D D  WE     +  K QA
Sbjct:  211 EQIERDIKEHVIKPIVPAELIDENTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVASGLADKCEVQLAYAIGVARPVSISIDTFGTGKVSEDILIEVVRNNFDLRPAGIIKMLDLRR---PIYKQTAAYGHFGRTDIDLPWERTDKAETLKEQA 397          
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK_THEP3 (S-adenosylmethionine synthetase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=metK PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.069e-49
Identity = 98/178 (55.06%), Postives = 126/178 (70.79%), Query Frame = -3
Query:  289 DEIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 822
            D I  D+ +HVIKP+IP+  +DDKT   + P+GRFVIGGP GD+GLTGRKII+DTY            GKDPTKVDRS +Y  R  AK+IVA+GLA++C VQ++YAIGV  PL + +D++GTGKI D++I +IVK+ FD RP  I  +LDL+R     + + AAYGHFGR D D  WE
Sbjct:  207 DTIERDIIEHVIKPIIPENMIDDKTKIFVNPTGRFVIGGPQGDSGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSASYAARYVAKNIVAAGLAKKCEVQLAYAIGVATPLEIGIDTFGTGKISDEKISEIVKQVFDLRPAAIIRDLDLRR---PIYRQVAAYGHFGRHDLDLPWE 381          
BLAST of DN617483 vs. ExPASy Swiss-Prot
Match: METK_BACHD (S-adenosylmethionine synthetase OS=Bacillus halodurans GN=metK PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.069e-49
Identity = 94/178 (52.81%), Postives = 132/178 (74.16%), Query Frame = -3
Query:  289 DEIAADLKQHVIKPVIPDKYLDDKTIFHLTPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 822
            ++I +DLKQHVI+ V+P++ +D++T + + P+GRFVIGGP GDAGLTGRKII+DTY            GKDPTKVDRSGAY  R  AK+IVA+GLA +C VQ++YAIGV +P+S+ +D++GTG++ +  ++++V+E+FD RP  I   LDL+R     + +TAAYGHFGR D +  WE
Sbjct:  213 EQIESDLKQHVIRSVVPEELIDEETKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSGAYAARYVAKNIVAAGLADKCEVQLAYAIGVAKPVSISIDTFGTGQVSEARLVELVREHFDLRPAGIIKMLDLRR---PIYKQTAAYGHFGRTDVELPWE 387          
The following BLAST results are available for this feature:
BLAST of DN617483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_ACACA8.399e-5159.36S-adenosylmethionine synthetase OS=Acanthamoeba ca... [more]
METK_CALS83.192e-5057.06S-adenosylmethionine synthetase OS=Caldicellulosir... [more]
METK_GEOTN5.444e-5053.93S-adenosylmethionine synthetase OS=Geobacillus the... [more]
METK_CLOPS5.444e-5056.18S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLOP15.444e-5056.18S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLOCE7.110e-5055.06S-adenosylmethionine synthetase OS=Clostridium cel... [more]
METK_ANATD1.213e-4957.63S-adenosylmethionine synthetase OS=Anaerocellum th... [more]
METK_GEOSW1.584e-4951.58S-adenosylmethionine synthetase OS=Geobacillus sp.... [more]
METK_THEP32.069e-4955.06S-adenosylmethionine synthetase OS=Thermoanaerobac... [more]
METK_BACHD2.069e-4952.81S-adenosylmethionine synthetase OS=Bacillus halodu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617483 ID=DN617483; Name=DN617483; organism=Citrus sinensis; type=EST; length=824bp
TTTTTTTTCAACTCAAAGATCTGCTCATTCTTGTTTTATTCATCAATAAA
ATTTCAGAACAATTCATATTCGCCTCTCAATTCATTATGCCTTGGATTGA
GAATCCATTAAACATATTTATTAAAAAAAAAAAAGGAAAAGAAAAAGAAA
GAAAGAAAGAAAACATTCATGTAACTGAAACAGAAGTAAAAAAGAAAAGT
AGACATATATAAGCACCAATGAGAGGCCAGCAGCTCATCCTTGATTAGTT
TAAGCTTGAAGTTTCTCCCACTTGAGTGGCTTAACAATCTCCCAAGTGAA
ATCAGGATCATCTCTGCCAAAGTGCCCATAAGCGGCAGTCTTCAAGAACC
TGCCGTTGCCACCCCTCTTGAGATCAAGATTAATAGAAATCATCCCAGGC
CTAAAATCAAAATTCTCCTTCACAATCTTCAAAATTTCCTTGTCAGGGAT
CTTCCCAGTCCCATAACTATCAACAAAAACTGACAAAGGCTCGGGCACAC
CAATAGCGTAAGAAACCTGAACAATGCATCTCCTGGCAAGCCCGCTTGCC
ACAATACTCTTAGCAGCTTGCCTTACAATGTAAGCACCGCTTCTATCAAC
CTTGGTAGGATCTTTCCCTGAGAAAGCCCCACCACCGTGTGCCCCCCAGC
CACCATAAGTATCAATAATAATCTTCCGGCCGGTGAGCCCAGCATCACCG
TGAGGGCCACCAATCACAAAACGGCCAGATGGGGTAAGATGGAAAATAGT
TTTGTCATCCAAGTACTTGTCAGGAATCACAGGCTTGATCACATGTTGCT
TGAGATCTGCAGCAATCTCATCAT
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