DN617482

Overview
NameDN617482
Unique NameDN617482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK4_VITVI (S-adenosylmethionine synthetase 4 OS=Vitis vinifera GN=METK4 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.109e-60
Identity = 108/119 (90.76%), Postives = 116/119 (97.48%), Query Frame = 1
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            M+TFLFTSESVNEGHPDKLCDQ+SDAVLDACL QDPDSKVACETCTKTN+VM+FGEITTKAN+DYEKIVRDTCR++GF S DVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTKRPEEIG
Sbjct:    1 MDTFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNLVMIFGEITTKANLDYEKIVRDTCRAVGFVSEDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 119          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK2_POPTR (S-adenosylmethionine synthetase 2 OS=Populus trichocarpa GN=METK2 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.109e-60
Identity = 112/119 (94.12%), Postives = 113/119 (94.96%), Query Frame = 1
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            METFLFTSESVNEGHPDKLCDQVSDA+LDACL QDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVR TCRSIGF S DVGLDAD C VLVNIEQQSPDIAQGVHGHLTKRPEEIG
Sbjct:    1 METFLFTSESVNEGHPDKLCDQVSDAILDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRSTCRSIGFVSDDVGLDADKCNVLVNIEQQSPDIAQGVHGHLTKRPEEIG 119          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK3_ORYSJ (S-adenosylmethionine synthetase 3 OS=Oryza sativa subsp. japonica GN=METK3 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.448e-60
Identity = 109/119 (91.60%), Postives = 115/119 (96.64%), Query Frame = 1
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            ++TFLFTSESVNEGHPDKLCDQ+SDAVLDACLA+DP+SKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCR IGF S DVGLDA+HCKVLVNIEQQSPDIAQGVHGH TKRPEEIG
Sbjct:    4 VDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGHFTKRPEEIG 122          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK2_ORYSJ (S-adenosylmethionine synthetase 2 OS=Oryza sativa subsp. japonica GN=SAM2 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 1.448e-60
Identity = 112/118 (94.92%), Postives = 112/118 (94.92%), Query Frame = 1
Query:  172 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCR IGF S DVGLDAD CKVLVNIEQQSPDIAQGVHGH TKRPEEIG
Sbjct:    4 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEEIG 121          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_GOSHI (S-adenosylmethionine synthetase OS=Gossypium hirsutum GN=SAMS PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.891e-60
Identity = 110/119 (92.44%), Postives = 116/119 (97.48%), Query Frame = 1
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            METFLFTSESVNEGHPDKLCDQ+SDAVLDACLAQDP+SKVACETC+KTNMVMVFGEITTKA+VDYEKIVRDTCR IGFTS DVGLDAD+CK LVNIEQQSPDIAQGVHGHL+KRPEEIG
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPESKVACETCSKTNMVMVFGEITTKADVDYEKIVRDTCRGIGFTSDDVGLDADNCKALVNIEQQSPDIAQGVHGHLSKRPEEIG 119          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK2_PEA (S-adenosylmethionine synthetase 2 OS=Pisum sativum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 1.891e-60
Identity = 110/118 (93.22%), Postives = 115/118 (97.46%), Query Frame = 1
Query:  172 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            ETFLFTSESVNEGHPDKLCDQ+SDAVLDACL QDP+SKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCR+IGF S DVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTKRPE+IG
Sbjct:    4 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEDIG 121          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_PHALU (S-adenosylmethionine synthetase OS=Phaseolus lunatus GN=SAMS PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.470e-60
Identity = 110/118 (93.22%), Postives = 115/118 (97.46%), Query Frame = 1
Query:  172 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            ETFLFTSESVNEGHPDKLCDQ+SDAVLDACL QDP+SKVACETCTKTN+VMVFGEITTKANVDYEKIVRDTCR+IGF S DVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTKRPEEIG
Sbjct:    3 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNLVMVFGEITTKANVDYEKIVRDTCRNIGFISNDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 120          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_MEDTR (S-adenosylmethionine synthetase OS=Medicago truncatula GN=METK PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.470e-60
Identity = 110/118 (93.22%), Postives = 113/118 (95.76%), Query Frame = 1
Query:  172 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            ETFLFTSESVNEGHPDKLCDQ+SDAVLDACL QDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCR+IGF S DVGLDAD CKVLVNIEQQSPDIAQGVHGH TKRPEE+G
Sbjct:    3 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRTIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEVG 120          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_MEDFA (S-adenosylmethionine synthetase OS=Medicago falcata GN=SAMS PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.470e-60
Identity = 110/118 (93.22%), Postives = 115/118 (97.46%), Query Frame = 1
Query:  172 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            ETFL+TSESVNEGHPDKLCDQ+SDAVLDACL QDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVR+TCR+IGF S DVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTKRPEEIG
Sbjct:    4 ETFLYTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRNTCRNIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 121          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_BRARP (S-adenosylmethionine synthetase OS=Brassica rapa subsp. pekinensis GN=SAMS PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.470e-60
Identity = 111/119 (93.28%), Postives = 113/119 (94.96%), Query Frame = 1
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            METFLFTSESVNEGHPDKLCDQ+SDAVLDACL QDPDSKVACETCTKTNMVMVFGEITTKA VDYEKIVRDTCRSIGF S DVGLDAD CKVLVNIEQQSPDIAQGVHGH TKRPE+IG
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKATVDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEDIG 119          
The following BLAST results are available for this feature:
BLAST of DN617482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK4_VITVI1.109e-6090.76S-adenosylmethionine synthetase 4 OS=Vitis vinifer... [more]
METK2_POPTR1.109e-6094.12S-adenosylmethionine synthetase 2 OS=Populus trich... [more]
METK3_ORYSJ1.448e-6091.60S-adenosylmethionine synthetase 3 OS=Oryza sativa ... [more]
METK2_ORYSJ1.448e-6094.92S-adenosylmethionine synthetase 2 OS=Oryza sativa ... [more]
METK_GOSHI1.891e-6092.44S-adenosylmethionine synthetase OS=Gossypium hirsu... [more]
METK2_PEA1.891e-6093.22S-adenosylmethionine synthetase 2 OS=Pisum sativum... [more]
METK_PHALU2.470e-6093.22S-adenosylmethionine synthetase OS=Phaseolus lunat... [more]
METK_MEDTR2.470e-6093.22S-adenosylmethionine synthetase OS=Medicago trunca... [more]
METK_MEDFA2.470e-6093.22S-adenosylmethionine synthetase OS=Medicago falcat... [more]
METK_BRARP2.470e-6093.28S-adenosylmethionine synthetase OS=Brassica rapa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01E07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617482 ID=DN617482; Name=DN617482; organism=Citrus sinensis; type=EST; length=527bp
CGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCTTTCTC
TCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAATTCCA
TTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTTCAGGT
TAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAATCAGT
GAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGCAGTAC
TGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTGAAACA
TGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATTACAACCAAGGC
CAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGATTGGGT
TCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTCTTGTT
AATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGGCATCT
CACAAAGCGGCCTGAGGAGATTGGTGC
back to top