DN617482

Overview
NameDN617482
Unique NameDN617482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617482_ssr12 microsatellite DN617482_ssr12:12..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12594 contig Csv1_Contig12594:32..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK3_ARATH (S-adenosylmethionine synthetase 3 OS=Arabidopsis thaliana GN=METK3 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.943e-58
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 1
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            METFLFTSESVNEGHPDKLCDQ+SDA+LDACL QDP+SKVACETCTKTNMVMVFGEITT A VDYEKIVR TCR IGF SADVGLDAD C VLVNIEQQSPDIAQGVHGHLTK+PE+IG
Sbjct:    1 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPESKVACETCTKTNMVMVFGEITTAAKVDYEKIVRSTCREIGFISADVGLDADKCNVLVNIEQQSPDIAQGVHGHLTKKPEDIG 119          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK1_DAUCA (S-adenosylmethionine synthetase 1 OS=Daucus carota GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 3.943e-58
Identity = 106/119 (89.08%), Postives = 112/119 (94.12%), Query Frame = 1
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            M+TFL+TSESVNEGHPDKLCDQ+SDAVLDACL QDPDSKVACETC+KTNMVMVFGEITTKANVDYEKIV  TCR IGF S DVGLDAD+CKVLV IEQQSPDIAQGVHGHLTKRPE+IG
Sbjct:    1 MDTFLYTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCSKTNMVMVFGEITTKANVDYEKIVHKTCRDIGFVSDDVGLDADNCKVLVQIEQQSPDIAQGVHGHLTKRPEDIG 119          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK2_DAUCA (S-adenosylmethionine synthetase 2 OS=Daucus carota GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 5.150e-58
Identity = 107/119 (89.92%), Postives = 112/119 (94.12%), Query Frame = 1
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            M+TFL TSESVNEGHPDKLCDQ+SDAVLDACL QDPDSKVACETC+KTNMVMVFGEITTKANVDYEKIVR TCR IGF S DVGLDAD+CKVLV IEQQSPDIAQGVHGHLTKRPE+IG
Sbjct:    1 MDTFLNTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCSKTNMVMVFGEITTKANVDYEKIVRKTCRDIGFVSDDVGLDADNCKVLVQIEQQSPDIAQGVHGHLTKRPEDIG 119          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK2_DIACA (S-adenosylmethionine synthetase 2 OS=Dianthus caryophyllus GN=SAM2 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 8.785e-58
Identity = 106/118 (89.83%), Postives = 112/118 (94.92%), Query Frame = 1
Query:  172 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            +TFLFTSESVNEGHPDKLCDQ+SDAVLDACLAQD +SKVACETCTKTN+VMVFGEITTKANVDYEKIV DTCR IGF S DVGLDAD+CKVLV IEQQSPDIAQGVHGHLTKRPE+IG
Sbjct:    6 DTFLFTSESVNEGHPDKLCDQISDAVLDACLAQDAESKVACETCTKTNLVMVFGEITTKANVDYEKIVADTCREIGFVSPDVGLDADNCKVLVYIEQQSPDIAQGVHGHLTKRPEDIG 123          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK3_HORVU (S-adenosylmethionine synthetase 3 OS=Hordeum vulgare GN=SAM3 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.147e-57
Identity = 108/118 (91.53%), Postives = 110/118 (93.22%), Query Frame = 1
Query:  172 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQD DSKVACET TKTNMVMV GEITTKA VDYEKIVRDTCR+IGF S DVGLDAD CKVLVNIEQQSPDIAQGVHGH TKRPEE+G
Sbjct:    4 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDADSKVACETVTKTNMVMVLGEITTKATVDYEKIVRDTCRNIGFISDDVGLDADRCKVLVNIEQQSPDIAQGVHGHFTKRPEEVG 121          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_CHLRE (S-adenosylmethionine synthetase OS=Chlamydomonas reinhardtii GN=METM PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 4.669e-51
Identity = 97/119 (81.51%), Postives = 104/119 (87.39%), Query Frame = 1
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            +E+FL+TSESVNEGHPDK+CDQVSDAVLDACL QDPDSKVACETC KT MVMVFGEITTKA VDYE IVR  C+ IGFTS DVGLDAD CKVLV+IE+QSPDI QGVHG  TK  EEIG
Sbjct:    4 LESFLYTSESVNEGHPDKICDQVSDAVLDACLEQDPDSKVACETCCKTGMVMVFGEITTKAKVDYEAIVRKVCKEIGFTSEDVGLDADKCKVLVHIEEQSPDIGQGVHGMGTKALEEIG 122          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_OSTLU (S-adenosylmethionine synthetase OS=Ostreococcus lucimarinus (strain CCE9901) GN=METK-1 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.007e-45
Identity = 86/116 (74.14%), Postives = 95/116 (81.90%), Query Frame = 1
Query:  178 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            FLFTSESVNEGHPDKL DQ+SD +LDACLAQDPDSKVACET TKTNMVMVFGEITTKA VDYE +VR  CR +GF S + GLD + C+VLV +  QSPDI QGVHG  TK  E+IG
Sbjct:    3 FLFTSESVNEGHPDKLADQISDGILDACLAQDPDSKVACETATKTNMVMVFGEITTKAKVDYEAVVRQVCRDVGFISDETGLDGNKCRVLVELHDQSPDIGQGVHGMGTKSDEDIG 118          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_OSTTA (S-adenosylmethionine synthetase OS=Ostreococcus tauri GN=METK PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.718e-45
Identity = 86/116 (74.14%), Postives = 95/116 (81.90%), Query Frame = 1
Query:  178 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            FLFTSESVNEGHPDKL DQ+SD +LDACL QDPDSKVACET TKTNMVMVFGEITTKA VDYE +VR  CR +GF S + GLD ++C+VLV +  QSPDI QGVHG  TK  EEIG
Sbjct:    3 FLFTSESVNEGHPDKLADQISDGILDACLEQDPDSKVACETATKTNMVMVFGEITTKAKVDYEAVVRQVCRDVGFISNETGLDGNNCRVLVELHDQSPDIGQGVHGMGTKSLEEIG 118          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK1_PEA (S-adenosylmethionine synthetase 1 (Fragment) OS=Pisum sativum GN=SAMS1 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 3.583e-43
Identity = 82/92 (89.13%), Postives = 88/92 (95.65%), Query Frame = 1
Query:  250 LDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            +DACL QD DSKVACETCTKTN+VMVFGEITTKANVDYEKIVR+TCR+IGF SADVGLDAD+CKVLVNIEQQSPDIAQGVHGH TK+PEEIG
Sbjct:    3 VDACLEQDSDSKVACETCTKTNLVMVFGEITTKANVDYEKIVRNTCRNIGFVSADVGLDADNCKVLVNIEQQSPDIAQGVHGHFTKKPEEIG 94          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK3_ACTCH (S-adenosylmethionine synthetase 3 (Fragment) OS=Actinidia chinensis GN=SAM3 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.757e-42
Identity = 80/86 (93.02%), Postives = 83/86 (96.51%), Query Frame = 1
Query:  268 QDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            QDPDSKVACETCTKTNMVMVFGEITTK N+DYEKIVRDTCR+IGF S DVGLDAD+CKVLVNIEQQSPDIAQGVHGHLTKRPEEIG
Sbjct:    1 QDPDSKVACETCTKTNMVMVFGEITTKGNIDYEKIVRDTCRNIGFVSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 86          
The following BLAST results are available for this feature:
BLAST of DN617482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK3_ARATH3.943e-5889.08S-adenosylmethionine synthetase 3 OS=Arabidopsis t... [more]
METK1_DAUCA3.943e-5889.08S-adenosylmethionine synthetase 1 OS=Daucus carota... [more]
METK2_DAUCA5.150e-5889.92S-adenosylmethionine synthetase 2 OS=Daucus carota... [more]
METK2_DIACA8.785e-5889.83S-adenosylmethionine synthetase 2 OS=Dianthus cary... [more]
METK3_HORVU1.147e-5791.53S-adenosylmethionine synthetase 3 OS=Hordeum vulga... [more]
METK_CHLRE4.669e-5181.51S-adenosylmethionine synthetase OS=Chlamydomonas r... [more]
METK_OSTLU1.007e-4574.14S-adenosylmethionine synthetase OS=Ostreococcus lu... [more]
METK_OSTTA1.718e-4574.14S-adenosylmethionine synthetase OS=Ostreococcus ta... [more]
METK1_PEA3.583e-4389.13S-adenosylmethionine synthetase 1 (Fragment) OS=Pi... [more]
METK3_ACTCH6.757e-4293.02S-adenosylmethionine synthetase 3 (Fragment) OS=Ac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617482 ID=DN617482; Name=DN617482; organism=Citrus sinensis; type=EST; length=527bp
CGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCTTTCTC
TCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAATTCCA
TTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTTCAGGT
TAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAATCAGT
GAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGCAGTAC
TGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTGAAACA
TGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATTACAACCAAGGC
CAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGATTGGGT
TCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTCTTGTT
AATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGGCATCT
CACAAAGCGGCCTGAGGAGATTGGTGC
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