DN617482

Overview
NameDN617482
Unique NameDN617482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617482_ssr12 microsatellite DN617482_ssr12:12..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12594 contig Csv1_Contig12594:32..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_DICDI (S-adenosylmethionine synthetase OS=Dictyostelium discoideum GN=metK PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.354e-41
Identity = 84/120 (70.00%), Postives = 96/120 (80.00%), Query Frame = 1
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH-GHLTKRPEEIG 525
            M ++LFTSESV EGHPDK+CDQVSDAVLDACLAQDP SKVACET TKT MVM+ GEITTKANVDY+K+VR+  + IG+  +  G D   C VLV IEQQSPDIAQGVH G +   PE+IG
Sbjct:    1 MSSYLFTSESVTEGHPDKICDQVSDAVLDACLAQDPLSKVACETATKTGMVMILGEITTKANVDYQKVVREAVKKIGYDDSSKGFDYKTCNVLVAIEQQSPDIAQGVHIGKV--NPEDIG 118          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK1_YEAST (S-adenosylmethionine synthetase 1 OS=Saccharomyces cerevisiae GN=SAM1 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 5.721e-41
Identity = 83/117 (70.94%), Postives = 93/117 (79.49%), Query Frame = 1
Query:  175 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            TFLFTSESV EGHPDK+CDQVSDA+LDACLA+DP SKVACET  KT M+MVFGEITTKA +DY+KIVRDT + IG+  +  G D   C VLV IEQQSPDIAQGVH    K  E+IG
Sbjct:    4 TFLFTSESVGEGHPDKICDQVSDAILDACLAEDPHSKVACETAAKTGMIMVFGEITTKAQLDYQKIVRDTIKKIGYDDSAKGFDYKTCNVLVAIEQQSPDIAQGVHEE--KDLEDIG 118          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_SCHPO (S-adenosylmethionine synthetase OS=Schizosaccharomyces pombe GN=sam1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 8.260e-40
Identity = 77/118 (65.25%), Postives = 95/118 (80.51%), Query Frame = 1
Query:  172 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            +TFLFTSESV EGHPDK+CDQ+SDA+LDACL  DP SKVACET +KT MVMVFGEITT++ +DY+K++R+T +SIG+  ++ G D   C VLV IEQQSPDIAQG+  H  K  EE+G
Sbjct:    3 QTFLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQIDYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGL--HYEKALEELG 118          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK2_YEAST (S-adenosylmethionine synthetase 2 OS=Saccharomyces cerevisiae GN=SAM2 PE=1 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 1.079e-39
Identity = 80/118 (67.80%), Postives = 93/118 (78.81%), Query Frame = 1
Query:  172 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            +TFLFTSESV EGHPDK+CDQVSDA+LDACL QDP SKVACET  KT M+MVFGEITTKA +DY++IVRDT + IG+  +  G D   C VLV IEQQSPDIAQG+  H  K  E++G
Sbjct:    5 KTFLFTSESVGEGHPDKICDQVSDAILDACLEQDPFSKVACETAAKTGMIMVFGEITTKARLDYQQIVRDTIKKIGYDDSAKGFDYKTCNVLVAIEQQSPDIAQGL--HYEKSLEDLG 120          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_ACACA (S-adenosylmethionine synthetase OS=Acanthamoeba castellanii GN=metK PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.840e-39
Identity = 75/107 (70.09%), Postives = 89/107 (83.18%), Query Frame = 1
Query:  172 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVH 492
            +T LFTSE V+E HPDKLCDQVSDA+LDACLA DP SKVACET +KT MVMVFGEITTK++ DY+K++R+T + IGFT + +G D   C +LV IEQQSPDIAQGVH
Sbjct:    5 KTLLFTSECVSESHPDKLCDQVSDAILDACLANDPYSKVACETASKTGMVMVFGEITTKSSFDYQKVIRETVKRIGFTDSSIGFDYKTCNILVAIEQQSPDIAQGVH 111          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_LEIIN (S-adenosylmethionine synthetase OS=Leishmania infantum GN=METK PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 2.403e-39
Identity = 79/107 (73.83%), Postives = 89/107 (83.18%), Query Frame = 1
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 489
            + + LF+SE V EGHPDKLCDQVSDAVLDACLA DP SKVACE+C KT MVMVFGEITTKA +DY+KIVR+T + IGF SAD GLD + C VLV IEQQSPDI QG+
Sbjct:    3 VHSILFSSEHVTEGHPDKLCDQVSDAVLDACLAGDPFSKVACESCAKTGMVMVFGEITTKAVLDYQKIVRNTIKDIGFDSADKGLDYESCNVLVAIEQQSPDICQGL 109          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_ASCIM (S-adenosylmethionine synthetase OS=Ascobolus immersus PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.558e-38
Identity = 79/117 (67.52%), Postives = 93/117 (79.49%), Query Frame = 1
Query:  175 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            +FLFTSESV EGHPDK+ DQVSDAVLDACLA+DP SKVACET TKT M+MVFGEITTKA++DY+KI+R+  + IG+  +  G D   C VLV IEQQSPDIAQG+  H  K  EE+G
Sbjct:   13 SFLFTSESVGEGHPDKIADQVSDAVLDACLAEDPLSKVACETATKTGMIMVFGEITTKAHLDYQKIIRNAVKDIGYDDSAKGFDYKTCNVLVAIEQQSPDIAQGL--HYEKALEELG 127          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_NEUCR (S-adenosylmethionine synthetase OS=Neurospora crassa GN=eth-1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.657e-38
Identity = 77/117 (65.81%), Postives = 92/117 (78.63%), Query Frame = 1
Query:  175 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            TFLFTSESV EGHPDK+ DQVSDA+LDACLA+DP SKVACET TKT M+MVFGEITTKA +DY+K+VR+  + IG+  +  G D   C +LV IE+QSPDIAQG+  HL  R E +G
Sbjct:   16 TFLFTSESVGEGHPDKIADQVSDAILDACLAEDPLSKVACETATKTGMIMVFGEITTKAKLDYQKVVRNAIKDIGYDDSSKGFDYKTCNLLVAIEEQSPDIAQGL--HLDDRLENLG 130          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK2_PONAB (S-adenosylmethionine synthetase isoform type-2 OS=Pongo abelii GN=MAT2A PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 8.548e-37
Identity = 74/117 (63.25%), Postives = 91/117 (77.78%), Query Frame = 1
Query:  175 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            TFLFTSESV EGHPDK+CDQ+SDAVLDA L QDPD+KVACET  KT M+++ GEIT++A VDY+K+VR+  + IG+  +  G D   C VLV +EQQSPDIAQGV  HL +  E+IG
Sbjct:   17 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIG 131          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK2_MACFA (S-adenosylmethionine synthetase isoform type-2 OS=Macaca fascicularis GN=MAT2A PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 8.548e-37
Identity = 74/117 (63.25%), Postives = 91/117 (77.78%), Query Frame = 1
Query:  175 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            TFLFTSESV EGHPDK+CDQ+SDAVLDA L QDPD+KVACET  KT M+++ GEIT++A VDY+K+VR+  + IG+  +  G D   C VLV +EQQSPDIAQGV  HL +  E+IG
Sbjct:   17 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIG 131          
The following BLAST results are available for this feature:
BLAST of DN617482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_DICDI3.354e-4170.00S-adenosylmethionine synthetase OS=Dictyostelium d... [more]
METK1_YEAST5.721e-4170.94S-adenosylmethionine synthetase 1 OS=Saccharomyces... [more]
METK_SCHPO8.260e-4065.25S-adenosylmethionine synthetase OS=Schizosaccharom... [more]
METK2_YEAST1.079e-3967.80S-adenosylmethionine synthetase 2 OS=Saccharomyces... [more]
METK_ACACA1.840e-3970.09S-adenosylmethionine synthetase OS=Acanthamoeba ca... [more]
METK_LEIIN2.403e-3973.83S-adenosylmethionine synthetase OS=Leishmania infa... [more]
METK_ASCIM1.558e-3867.52S-adenosylmethionine synthetase OS=Ascobolus immer... [more]
METK_NEUCR2.657e-3865.81S-adenosylmethionine synthetase OS=Neurospora cras... [more]
METK2_PONAB8.548e-3763.25S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK2_MACFA8.548e-3763.25S-adenosylmethionine synthetase isoform type-2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617482 ID=DN617482; Name=DN617482; organism=Citrus sinensis; type=EST; length=527bp
CGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCTTTCTC
TCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAATTCCA
TTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTTCAGGT
TAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAATCAGT
GAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGCAGTAC
TGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTGAAACA
TGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATTACAACCAAGGC
CAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGATTGGGT
TCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTCTTGTT
AATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGGCATCT
CACAAAGCGGCCTGAGGAGATTGGTGC
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