DN617482

Overview
NameDN617482
Unique NameDN617482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617482_ssr12 microsatellite DN617482_ssr12:12..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12594 contig Csv1_Contig12594:32..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK2_HUMAN (S-adenosylmethionine synthetase isoform type-2 OS=Homo sapiens GN=MAT2A PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 8.548e-37
Identity = 74/117 (63.25%), Postives = 91/117 (77.78%), Query Frame = 1
Query:  175 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            TFLFTSESV EGHPDK+CDQ+SDAVLDA L QDPD+KVACET  KT M+++ GEIT++A VDY+K+VR+  + IG+  +  G D   C VLV +EQQSPDIAQGV  HL +  E+IG
Sbjct:   17 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIG 131          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK2_MOUSE (S-adenosylmethionine synthetase isoform type-2 OS=Mus musculus GN=Mat2a PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.116e-36
Identity = 73/117 (62.39%), Postives = 91/117 (77.78%), Query Frame = 1
Query:  175 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            TFLFTSESV EGHPDK+CDQ+SDAVLDA L QDPD+KVACET  KT M+++ GEIT++A +DY+K+VR+  + IG+  +  G D   C VLV +EQQSPDIAQGV  HL +  E+IG
Sbjct:   17 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAIDYQKVVREAIKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIG 131          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK2_RAT (S-adenosylmethionine synthetase isoform type-2 OS=Rattus norvegicus GN=Mat2a PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.487e-36
Identity = 72/117 (61.54%), Postives = 91/117 (77.78%), Query Frame = 1
Query:  175 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            TFLFTSESV EGHPDK+CDQ++DAVLDA L QDPD+KVACET  KT M+++ GEIT++A +DY+K+VR+  + IG+  +  G D   C VLV +EQQSPDIAQGV  HL +  E+IG
Sbjct:   17 TFLFTSESVGEGHPDKICDQINDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAIDYQKVVREAIKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGV--HLDRNEEDIG 131          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_BRAHW (S-adenosylmethionine synthetase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=metK PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.242e-36
Identity = 69/107 (64.49%), Postives = 86/107 (80.37%), Query Frame = 1
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 489
            ++ + F+SESV EGHPDK+CD VSDAVLD CL QDP+S+VACET  KT M+M+ GEITTKA +DY+KI RDT R IG+TS+D+G DAD C V+ +I +QSPDI  GV
Sbjct:    4 IKNYYFSSESVTEGHPDKICDAVSDAVLDECLKQDPNSRVACETLAKTGMIMIAGEITTKAKLDYQKIARDTVRRIGYTSSDMGFDADTCAVMESIAEQSPDIDMGV 110          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_LACBA (S-adenosylmethionine synthetase OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=metK PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.541e-36
Identity = 72/113 (63.72%), Postives = 87/113 (76.99%), Query Frame = 1
Query:  172 ETFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKR 510
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA LAQDPDS+VACET   T +V+VFGEI+TKA VD +K+VR T + IG+T    G D D+C VLV I++QSPDIAQGV   L  R
Sbjct:    3 ERHLFTSESVSEGHPDKIADQISDAILDALLAQDPDSRVACETSVTTGLVLVFGEISTKAYVDIQKVVRQTIKEIGYTDGQYGFDGDNCAVLVAIDEQSPDIAQGVDDSLETR 115          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_ANASK (S-adenosylmethionine synthetase OS=Anaeromyxobacter sp. (strain K) GN=metK PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.234e-35
Identity = 70/107 (65.42%), Postives = 84/107 (78.50%), Query Frame = 1
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 489
            ++ FLFTSESV EGHPDK+ DQ+SDAVLDA L QDP  +VACET  KT  VM+ GEITTKA +DY K+ R+T R IG+TS D+G DA+ C VLV ++QQSPDI QGV
Sbjct:    3 LQDFLFTSESVTEGHPDKMADQISDAVLDAVLRQDPKGRVACETLLKTGYVMIAGEITTKARIDYPKLARETVRRIGYTSGDMGFDANTCAVLVAVDQQSPDIGQGV 109          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_ANADE (S-adenosylmethionine synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=metK PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.234e-35
Identity = 70/107 (65.42%), Postives = 84/107 (78.50%), Query Frame = 1
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 489
            ++ FLFTSESV EGHPDK+ DQ+SDAVLDA L QDP  +VACET  KT  VM+ GEITTKA +DY K+ R+T R IG+TS D+G DA+ C VLV ++QQSPDI QGV
Sbjct:    3 LQDFLFTSESVTEGHPDKMADQISDAVLDAVLRQDPKGRVACETLLKTGYVMIAGEITTKARIDYPKLARETVRRIGYTSGDMGFDANTCAVLVAVDQQSPDIGQGV 109          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_ANAD2 (S-adenosylmethionine synthetase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=metK PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.234e-35
Identity = 70/107 (65.42%), Postives = 84/107 (78.50%), Query Frame = 1
Query:  169 METFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGV 489
            ++ FLFTSESV EGHPDK+ DQ+SDAVLDA L QDP  +VACET  KT  VM+ GEITTKA +DY K+ R+T R IG+TS D+G DA+ C VLV ++QQSPDI QGV
Sbjct:    3 LQDFLFTSESVTEGHPDKMADQISDAVLDAVLRQDPKGRVACETLLKTGYVMIAGEITTKARIDYPKLARETVRRIGYTSGDMGFDANTCAVLVAVDQQSPDIGQGV 109          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK1_CAEEL (Probable S-adenosylmethionine synthetase 1 OS=Caenorhabditis elegans GN=sams-1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.234e-35
Identity = 74/116 (63.79%), Postives = 90/116 (77.59%), Query Frame = 1
Query:  178 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            FLFTSESV+EGHPDK+CDQ+SDAVLDA L QDP++KVACET TKT MVM+ GEIT+KA VDY+ +VR     IGFT + +G D   C VLV +EQQSP+IA GV  H+ K  E++G
Sbjct:    5 FLFTSESVSEGHPDKMCDQISDAVLDAHLKQDPNAKVACETVTKTGMVMLCGEITSKAVVDYQVLVRRVIEKIGFTDSSIGFDHKTCNVLVALEQQSPEIAAGV--HVNKDGEDVG 118          
BLAST of DN617482 vs. ExPASy Swiss-Prot
Match: METK_DROME (S-adenosylmethionine synthetase OS=Drosophila melanogaster GN=M(2)21AB PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 6.126e-35
Identity = 70/117 (59.83%), Postives = 91/117 (77.78%), Query Frame = 1
Query:  175 TFLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRSIGFTSADVGLDADHCKVLVNIEQQSPDIAQGVHGHLTKRPEEIG 525
            TFLFTSESV EGHPDK+CDQ+SDA+LDA L QDP++KVACET  KT M+++ GEIT+KA VDY+K+VR+T + IG+  +  G D   C VL+ ++QQSP+IA GV  H+ +  EEIG
Sbjct:   28 TFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKTGMILLCGEITSKAVVDYQKVVRETVQHIGYDDSSKGFDFKTCNVLLALDQQSPEIAAGV--HVNRAEEEIG 142          
The following BLAST results are available for this feature:
BLAST of DN617482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK2_HUMAN8.548e-3763.25S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK2_MOUSE1.116e-3662.39S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK2_RAT2.487e-3661.54S-adenosylmethionine synthetase isoform type-2 OS=... [more]
METK_BRAHW4.242e-3664.49S-adenosylmethionine synthetase OS=Brachyspira hyo... [more]
METK_LACBA5.541e-3663.72S-adenosylmethionine synthetase OS=Lactobacillus b... [more]
METK_ANASK1.234e-3565.42S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]
METK_ANADE1.234e-3565.42S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]
METK_ANAD21.234e-3565.42S-adenosylmethionine synthetase OS=Anaeromyxobacte... [more]
METK1_CAEEL1.234e-3563.79Probable S-adenosylmethionine synthetase 1 OS=Caen... [more]
METK_DROME6.126e-3559.83S-adenosylmethionine synthetase OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617482 ID=DN617482; Name=DN617482; organism=Citrus sinensis; type=EST; length=527bp
CGTTTTACCTCCTCTCTCTCTTCTCTCAGCGTATGCATATCGTCTTTCTC
TCGTTCTTCTGGGTACTTACCATTTTCGTATATCACCACCTTCAATTCCA
TTTGTACTCGCACCACGGCCTCCTGCAAAGCGAAAGCTGCAGCTTCAGGT
TAAATCAAATTAAAGAAAATGGAAACATTTCTTTTCACATCAGAATCAGT
GAACGAGGGTCACCCGGACAAGCTGTGTGACCAAGTTTCGGACGCAGTAC
TGGACGCGTGTTTGGCTCAGGATCCTGACAGCAAAGTTGCTTGTGAAACA
TGCACAAAGACCAACATGGTCATGGTTTTTGGAGAAATTACAACCAAGGC
CAATGTGGATTACGAGAAAATCGTGCGTGATACATGCAGATCGATTGGGT
TCACATCGGCCGATGTGGGGCTTGATGCTGATCACTGCAAAGTTCTTGTT
AATATTGAGCAGCAGAGCCCTGACATTGCTCAGGGTGTTCATGGGCATCT
CACAAAGCGGCCTGAGGAGATTGGTGC
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