DN617477

Overview
NameDN617477
Unique NameDN617477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8496 contig Csv1_Contig8496:102..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNL1_CHICK (Cyclin-L1 OS=Gallus gallus GN=CCNL1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.595e-38
Identity = 85/185 (45.95%), Postives = 118/185 (63.78%), Query Frame = 3
Query:   54 IYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETP--LELRQEAWNLANDSLR 602
            +   ++N  L +  L+ +PS   G+D  TET LR+ GC+LIQ +GILL+LPQ  MATGQVLF RF+  +SF +  ++ V+ + V LASK+EE+PR+ R VI VFHR+   RE      L +  +++  LK ++ + ER +LKE+GF  HV+HPHK I  YL  LE      L Q +WN  NDSLR
Sbjct:   56 VLITLENCLLPEHTLRFTPSMSSGLDPDTETELRVTGCELIQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRHLREKKKPVPL-ILDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQTSWNYMNDSLR 239          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNL2_XENTR (Cyclin-L2 OS=Xenopus tropicalis GN=ccnl2 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.641e-38
Identity = 85/185 (45.95%), Postives = 118/185 (63.78%), Query Frame = 3
Query:   54 IYTAIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETP--LELRQEAWNLANDSLR 602
            +  +++N  + +E+   +PS  DGID  TE  LR  GC+L+Q +GILL+LPQ  MATGQVLF RF+  +SF +  ++ VA + V LASK+EE+PR+ R VI VFHR+   RE      L +  +++  LK ++ + ER +LKE+GF  HV+HPHK I  YL  LE      L Q +WN  NDSLR
Sbjct:   23 VMISLENCLMAEERCALTPSVVDGIDVNTEIDLRCVGCELVQAAGILLRLPQVAMATGQVLFQRFFYTKSFVKHSMEHVAMACVHLASKIEEAPRRIRDVINVFHRLRQLREKQKSTPL-ILDQEYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNKHLVQTSWNYMNDSLR 206          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNL1_PONAB (Cyclin-L1 OS=Pongo abelii GN=CCNL1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.079e-26
Identity = 56/103 (54.37%), Postives = 77/103 (74.76%), Query Frame = 3
Query:   66 IDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRM 374
            ID+  + +E+L  +PS +DG+D  +ET LRI GC+LIQ +GILL+LPQ  MATGQVLFHRF+  +SF +   +IVA + + LASK+EE+PR+ R VI VFH +
Sbjct:   54 IDHSLIPEERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHL 156          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCT14_ORYSJ (Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.314e-21
Identity = 61/182 (33.52%), Postives = 106/182 (58.24%), Query Frame = 3
Query:   72 NFYLTDEQLKD-SPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRRE---GLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE-LRQEAWNLANDSLR 602
            ++Y + +++++ SPSR+DGID   E+ LR   C  +Q+ G+ LK+PQ  +AT  V  HRFY ++S A+ D + +A   ++LA K+EE+PR  + VI+V + +  +++   G  I+  +++ ++    K  +   ER +L  +GF  +V HP+K +   +   +     L Q AWN  ND LR
Sbjct:   35 SWYFSRKEIEENSPSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFYLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAGQRIKQKEVYDQQ----KELILLAERVVLATLGFDLNVHHPYKPLVEAIRKFKVAQNALAQVAWNFVNDGLR 212          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCT12_ORYSJ (Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.959e-20
Identity = 66/182 (36.26%), Postives = 103/182 (56.59%), Query Frame = 3
Query:   72 NFYLTDEQL-KDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRRE---GLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLE-TPLELRQEAWNLANDSLR 602
            ++Y T E+L K SPSRKDGI E  E+ +R   C  I++ GI LKLPQ  +AT  +  HRFY  +S A+   + +A   ++LASK+E++P    QVI V +    RR+      I   D+F K+    K  +   ER +L  + F  +++HP++ + + +  L  +  E++Q AWN  ND L+
Sbjct:   17 SWYFTREELEKFSPSRKDGITEIMESEIRQLYCSFIRDVGIRLKLPQMTIATAIMFCHRFYLYQSLAKNGWQTIATVCIFLASKVEDTPCPLDQVIRVAYGTMYRRDPATARRIHQKDVFEKQ----KALILTGERLVLTTVRFDFNIQHPYRPLLDAMEKLGISQKEVKQVAWNFVNDWLK 194          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCT13_ORYSJ (Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.342e-20
Identity = 56/179 (31.28%), Postives = 103/179 (57.54%), Query Frame = 3
Query:   72 NFYLTDEQLKD-SPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE-LRQEAWNLANDSLR 602
            ++Y + +++++ S SR+DGID   E+ LR   C  +Q+ G+ LK+PQ  +AT  V  HRF+ ++S A+ D + +A   ++LA K+EE+PR  + VI++ + +  +++   ++ +    + + + K  +   ER +L  +GF  +V HP+K +   +   +     L Q AWN  ND LR
Sbjct:   36 SWYFSRKEIEENSLSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFFLRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVILISYEIIHKKDAAAVQRIKQ-KEVYEQQKELILLGERVVLVTLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLR 213          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNT1_PANTR (Cyclin-T1 OS=Pan troglodytes GN=CCNT1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.342e-20
Identity = 58/175 (33.14%), Postives = 95/175 (54.29%), Query Frame = 3
Query:   75 FYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSL 599
            +Y T EQL++SPSR+ G+D   E + R    +L+Q+ G  L + Q  + T  V  HRFY  +SF +F    VA ++++LA+K+EE P+K   VI V H     +E LP    D  S+ + +   ++   E  IL+ +GF   ++HPH  +      +    +L Q ++ +A +SL
Sbjct:   11 WYFTREQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLP----DTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSL 181          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNT1_HUMAN (Cyclin-T1 OS=Homo sapiens GN=CCNT1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.342e-20
Identity = 58/175 (33.14%), Postives = 95/175 (54.29%), Query Frame = 3
Query:   75 FYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSL 599
            +Y T EQL++SPSR+ G+D   E + R    +L+Q+ G  L + Q  + T  V  HRFY  +SF +F    VA ++++LA+K+EE P+K   VI V H     +E LP    D  S+ + +   ++   E  IL+ +GF   ++HPH  +      +    +L Q ++ +A +SL
Sbjct:   12 WYFTREQLENSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLP----DTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSL 182          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNT1_HORSE (Cyclin-T1 OS=Equus caballus GN=CCNT1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.364e-20
Identity = 58/175 (33.14%), Postives = 95/175 (54.29%), Query Frame = 3
Query:   75 FYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSL 599
            +Y T EQL++SPSR+ G+D   E + R    +L+Q+ G  L + Q  + T  V  HRFY  +SF +F    VA ++++LA+K+EE P+K   VI V H     +E LP    D  S+ + +   ++   E  IL+ +GF   ++HPH  +      +    +L Q ++ +A +SL
Sbjct:   12 WYFTREQLENSPSRRFGLDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFHRNSVAPAALFLAAKVEEQPKKLEHVIKVAHACLHPQESLP----DTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSL 182          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCT14_ARATH (Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.700e-20
Identity = 59/170 (34.71%), Postives = 95/170 (55.88%), Query Frame = 3
Query:   99 KDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEM-SRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE-LRQEAWNLANDSLR 602
            ++SPSR D ID   ET LR   C  +Q+ G+ LK+PQ  +AT  +  HRF+ ++S AR D + +A   ++LA K+EE+PR  + VI+V + +  +++  P     +  K+  E + E+    E+ +L  +GF  +V HP+K +   +   +     L Q AWN  ND LR
Sbjct:   42 ENSPSRLDSIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHARNDRRTIATVCMFLAGKVEETPRPLKDVIVVSYEIIHKKD--PTTAQKIKQKEVYEQQKELILNGEKIVLSTLGFDFNVYHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLR 209          
The following BLAST results are available for this feature:
BLAST of DN617477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CCNL1_CHICK1.595e-3845.95Cyclin-L1 OS=Gallus gallus GN=CCNL1 PE=2 SV=1[more]
CCNL2_XENTR4.641e-3845.95Cyclin-L2 OS=Xenopus tropicalis GN=ccnl2 PE=2 SV=1[more]
CCNL1_PONAB9.079e-2654.37Cyclin-L1 OS=Pongo abelii GN=CCNL1 PE=3 SV=1[more]
CCT14_ORYSJ2.314e-2133.52Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT12_ORYSJ1.959e-2036.26Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT13_ORYSJ3.342e-2031.28Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCNT1_PANTR3.342e-2033.14Cyclin-T1 OS=Pan troglodytes GN=CCNT1 PE=2 SV=1[more]
CCNT1_HUMAN3.342e-2033.14Cyclin-T1 OS=Homo sapiens GN=CCNT1 PE=1 SV=1[more]
CCNT1_HORSE4.364e-2033.14Cyclin-T1 OS=Equus caballus GN=CCNT1 PE=1 SV=1[more]
CCT14_ARATH5.700e-2034.71Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617477 ID=DN617477; Name=DN617477; organism=Citrus sinensis; type=EST; length=602bp
TGCCGAGGCAAATCCTCCAGGTAGTTGAAAGTGAGGGATCTTGAGCAAGA
ATGATTTACACGGCAATTGATAATTTTTACCTAACAGATGAGCAGCTAAA
GGACTCACCGTCTAGAAAAGATGGCATTGATGAAGCAACAGAAACCACTT
TGAGAATCTATGGCTGTGACCTCATTCAAGAAAGTGGAATTTTGCTTAAA
TTACCGCAAGCTGTAATGGCTACTGGTCAGGTTTTATTCCATCGTTTCTA
TTGCAAGAGATCATTTGCTCGTTTTGATGTGAAGATAGTGGCTGCTAGTT
CCGTATGGCTTGCATCAAAGCTGGAGGAGAGCCCTCGGAAAGCAAGGCAA
GTAATCATTGTTTTCCATAGAATGGAATGCAGAAGGGAGGGCTTACCCAT
AGAGCATTTGGATTTGTTTTCAAAGAAATTTTCAGAATTGAAAATGGAAA
TGAGCAGAACAGAAAGACATATATTGAAAGAGATGGGCTTTGTTTGTCAC
GTTGAACACCCTCACAAATTCATATCAAACTACCTTGCCACCCTTGAGAC
ACCTCTAGAATTGAGACAGGAAGCTTGGAATCTAGCAAATGATAGTCTGC
GC
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