DN617477

Overview
NameDN617477
Unique NameDN617477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8496 contig Csv1_Contig8496:102..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCT11_ORYSJ (Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.700e-20
Identity = 63/183 (34.43%), Postives = 107/183 (58.47%), Query Frame = 3
Query:   63 AIDNFYLT-DEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRT-ERHILKEMGFVCHVEHPHKFISNYLATLET-PLELRQEAWNLANDSLR 602
            A  ++Y+T DE  + SPSR+DG+  A E  LR   C  I++ G+ L+LPQ  +AT  +L HRFY ++S A+ + + VA   V+LASK+E++P   ++VIIV +    R++        ++ K+  E + E+    E  +L  + F  +++HP++ +   L  L    +E++Q A NL ND++R
Sbjct:    5 AAGSWYVTRDEVERGSPSRRDGVGAAKEAELRATYCSFIRDVGLRLQLPQVTIATATLLCHRFYLRQSHAKNEWQTVATVCVFLASKIEDTPCPLQRVIIVAYETMYRKDCNAAHR--IYQKEVLEKQKELILVGETLLLSTIRFDFNIQHPYEPLKLALKKLGIFQMEVKQVAVNLINDAIR 185          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCT15_ARATH (Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 7.445e-20
Identity = 60/182 (32.97%), Postives = 101/182 (55.49%), Query Frame = 3
Query:   66 IDNFYLTDEQLKD-SPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEM-SRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE-LRQEAWNLANDSLR 602
            +  +Y   +++++ SPSR DGID   ET LR   C  +Q+ G+ LK+PQ  +AT  +  HRF+ ++S A+ D + +A   ++LA K+EE+PR  + VI V + +  +++  P     +  K+  E + E+    E+ +L  +GF  +V HP+K +   +   +     L Q AWN  ND LR
Sbjct:   30 VSRWYFGRKEIEENSPSRLDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFFRQSHAKNDRRTIATVCMFLAGKVEETPRPLKDVIFVSYEIINKKD--PGASQKIKQKEVYEQQKELILNGEKIVLSTLGFDLNVYHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLR 209          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNT1_BOVIN (Cyclin-T1 OS=Bos taurus GN=CCNT1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.445e-20
Identity = 58/175 (33.14%), Postives = 95/175 (54.29%), Query Frame = 3
Query:   75 FYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSL 599
            +Y T EQL++SPSR+ G+D   E + R    +L+Q+ G  L + Q  + T  V  HRFY  +SF +F    VA ++++LA+K+EE P+K   VI V H     +E LP    D  S+ + +   ++   E  IL+ +GF   ++HPH  +      +    +L Q ++ +A +SL
Sbjct:   12 WYFTREQLENSPSRRFGLDPDKELSNRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQFHRNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLP----DTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSL 182          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNT1_MOUSE (Cyclin-T1 OS=Mus musculus GN=Ccnt1 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.270e-19
Identity = 57/175 (32.57%), Postives = 95/175 (54.29%), Query Frame = 3
Query:   75 FYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSL 599
            +Y T EQL++SPSR+ G+D   E + R    +L+Q+ G  L + Q  + T  V  HRFY  +SF +F    +A ++++LA+K+EE P+K   VI V H     +E LP    D  S+ + +   ++   E  IL+ +GF   ++HPH  +      +    +L Q ++ +A +SL
Sbjct:   12 WYFTREQLENSPSRRFGVDSDKELSYRQQAANLLQDVGQRLNVSQLTINTAIVYMHRFYMIQSFTQFHRYSMAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLP----DTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSL 182          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNT2_HUMAN (Cyclin-T2 OS=Homo sapiens GN=CCNT2 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 8.231e-19
Identity = 57/179 (31.84%), Postives = 95/179 (53.07%), Query Frame = 3
Query:   63 AIDNFYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSL 599
            A   ++ T EQL+++PSR+ G++   E + R    +LIQE G  L + Q  + T  V  HRFY   SF +F+  I+++++++LA+K+EE  RK   VI V H   C     P+  LD     + +   E+   E  +L+ +GF   +EHPH  +      +    +L Q ++ +A +SL
Sbjct:    7 ASSRWFFTREQLENTPSRRCGVEADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAH--ACLHPLEPL--LDTKCDAYLQQTQELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSL 181          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCT11_ARATH (Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.968e-18
Identity = 64/181 (35.36%), Postives = 92/181 (50.83%), Query Frame = 3
Query:   72 NFYLTDEQL-KDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYL---ATLETPLELRQEAWNLANDSLR 602
            N+Y T E + K SPSR DGI+   ET  R      +QE G  L  PQ  +AT  VL  RF+ ++S  + D K VA   +++A K+E SPR A  V+ V +R+   +E L           F  LKM +   E+ +L  +     +EHP+K + +++      E    L Q A+N  NDSLR
Sbjct:    6 NWYNTREAIEKTSPSRLDGINLKEETFQRWSYTSFLQELGQRLNNPQKTIATAIVLCQRFFTRQSLTKNDPKTVAIICMFIAGKVEGSPRPAGDVVFVSYRVLFNKEPL--------RDVFERLKMTVLTGEKLVLSTLECDLEIEHPYKLVMDWVKRSVKTEDGRRLCQAAFNFVNDSLR 178          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CG1C_SCHPO (Cyclin pch1 OS=Schizosaccharomyces pombe GN=pch1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.552e-17
Identity = 54/175 (30.86%), Postives = 94/175 (53.71%), Query Frame = 3
Query:   81 LTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLAT-LETPLELRQEAWNLANDSLR 602
            ++ +QL  +PS  DGI    E   R  GC+ I   G+ LKLPQ  +AT  + FHRFY + S   +    VAA+ ++LA+K+E+S RK R ++I   ++  +   + +   D  +K++   +  +  TE  +L+ + F   VEHP+ ++ +++   +     + + AW   NDS R
Sbjct:   20 ISKDQLVFTPSALDGIPLDQEEIQRSKGCNFIINVGLRLKLPQTALATANIYFHRFYLRFSLKNYHYYEVAATCIFLATKVEDSVRKLRDIVINCAKVAQKNSNVLV---DEQTKEYWRWRDVILYTEEVLLEALCFDFTVEHPYPYVLSFIKKFVADDKNVTKVAWTYINDSTR 191          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCT12_ARATH (Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.458e-17
Identity = 57/180 (31.67%), Postives = 93/180 (51.67%), Query Frame = 3
Query:   75 FYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHK----FISNYLATLETPLELRQEAWNLANDSLR 602
            F+  +E  ++SPSR+DGID  TET LR   C  ++  G  LK+PQ  +AT     HRF+ ++S A+ D + +A   + LA K+EE+P     VII  +    +++    +  +++ ++    K  +   E  +L  + F   + HP+K     I  Y+   +   +L Q AWN  ND LR
Sbjct:   32 FFSREEIERNSPSRRDGIDLKTETRLRDSYCTFLEILGERLKVPQVTIATAIFFCHRFFLRQSHAKNDRQTIATVCMLLAGKVEETPVTLEDVIIASYERIHKKDLAGAQRKEVYDQQ----KELVLIGEELVLSTLNFDLCISHPYKPLVEAIKKYMVE-DAKTQLAQFAWNFVNDCLR 206          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNT_DROME (Cyclin-T OS=Drosophila melanogaster GN=CycT PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 4.516e-17
Identity = 57/175 (32.57%), Postives = 91/175 (52.00%), Query Frame = 3
Query:   75 FYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSL 599
            +Y +++QL +SPSR+ GI    E   R     LIQE G  L++ Q  + T  V  HRFY   SF  F    +A++S++LA+K+EE PRK   VI          + LP        + ++EL  E+   E  +L+ +GF   ++HPH  +      ++   +L Q ++ LA++SL
Sbjct:   45 WYFSNDQLANSPSRRCGIKGDDELQYRQMTAYLIQEMGQRLQVSQLCINTAIVYMHRFYAFHSFTHFHRNSMASASLFLAAKVEEQPRKLEHVI------RAANKCLP----PTTEQNYAELAQELVFNENVLLQTLGFDVAIDHPHTHVVRTCQLVKACKDLAQTSYFLASNSL 209          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNK_HUMAN (Cyclin-K OS=Homo sapiens GN=CCNK PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.314e-16
Identity = 57/179 (31.84%), Postives = 89/179 (49.72%), Query Frame = 3
Query:   75 FYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETP----LELRQEAWNLANDSL 599
            +Y   + L  +PS+ +G+D ATE   R  G   I + G  L L    +ATG + FHRFY   SF +F   +  A  ++LA K+EE+P+K + +I         +    + +   F +   + K E+   ER +L+ + F   VEHP++F+  Y   L+       +L Q AW   NDSL
Sbjct:   24 WYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDII---------KTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSL 193          
The following BLAST results are available for this feature:
BLAST of DN617477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CCT11_ORYSJ5.700e-2034.43Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT15_ARATH7.445e-2032.97Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=... [more]
CCNT1_BOVIN7.445e-2033.14Cyclin-T1 OS=Bos taurus GN=CCNT1 PE=1 SV=1[more]
CCNT1_MOUSE1.270e-1932.57Cyclin-T1 OS=Mus musculus GN=Ccnt1 PE=1 SV=2[more]
CCNT2_HUMAN8.231e-1931.84Cyclin-T2 OS=Homo sapiens GN=CCNT2 PE=1 SV=2[more]
CCT11_ARATH6.968e-1835.36Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CY... [more]
CG1C_SCHPO1.552e-1730.86Cyclin pch1 OS=Schizosaccharomyces pombe GN=pch1 P... [more]
CCT12_ARATH3.458e-1731.67Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=... [more]
CCNT_DROME4.516e-1732.57Cyclin-T OS=Drosophila melanogaster GN=CycT PE=1 S... [more]
CCNK_HUMAN1.314e-1631.84Cyclin-K OS=Homo sapiens GN=CCNK PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617477 ID=DN617477; Name=DN617477; organism=Citrus sinensis; type=EST; length=602bp
TGCCGAGGCAAATCCTCCAGGTAGTTGAAAGTGAGGGATCTTGAGCAAGA
ATGATTTACACGGCAATTGATAATTTTTACCTAACAGATGAGCAGCTAAA
GGACTCACCGTCTAGAAAAGATGGCATTGATGAAGCAACAGAAACCACTT
TGAGAATCTATGGCTGTGACCTCATTCAAGAAAGTGGAATTTTGCTTAAA
TTACCGCAAGCTGTAATGGCTACTGGTCAGGTTTTATTCCATCGTTTCTA
TTGCAAGAGATCATTTGCTCGTTTTGATGTGAAGATAGTGGCTGCTAGTT
CCGTATGGCTTGCATCAAAGCTGGAGGAGAGCCCTCGGAAAGCAAGGCAA
GTAATCATTGTTTTCCATAGAATGGAATGCAGAAGGGAGGGCTTACCCAT
AGAGCATTTGGATTTGTTTTCAAAGAAATTTTCAGAATTGAAAATGGAAA
TGAGCAGAACAGAAAGACATATATTGAAAGAGATGGGCTTTGTTTGTCAC
GTTGAACACCCTCACAAATTCATATCAAACTACCTTGCCACCCTTGAGAC
ACCTCTAGAATTGAGACAGGAAGCTTGGAATCTAGCAAATGATAGTCTGC
GC
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