DN617477

Overview
NameDN617477
Unique NameDN617477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8496 contig Csv1_Contig8496:102..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNK_MOUSE (Cyclin-K OS=Mus musculus GN=Ccnk PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 4.994e-16
Identity = 56/179 (31.28%), Postives = 88/179 (49.16%), Query Frame = 3
Query:   75 FYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETP----LELRQEAWNLANDSL 599
            +Y   + L  +PS+ +G+D ATE   R  G   I + G  L L    +A G + FHRFY   SF +F   +  A  ++LA K+EE+P+K + +I         +    + +   F +   + K E+   ER +L+ + F   VEHP++F+  Y   L+       +L Q AW   NDSL
Sbjct:   24 WYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLANGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDII---------KTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSL 193          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCT13_ARATH (Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.478e-15
Identity = 54/177 (30.51%), Postives = 90/177 (50.85%), Query Frame = 3
Query:   75 FYLTDEQLKDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKK-FSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLR 602
            ++  +E  + SPSRKDGID   E+ LR   C  +Q  G+ L + Q  ++   V+ HRFY ++S A+ D + +A SS++LA K E+ P +   V++  +  E   E  P   + +   + + E K  +   E  +L    F   +E P+K ++  L  L    +L   AWN  +D +R
Sbjct:   35 YFSREEIERFSPSRKDGIDLVKESFLRSSYCTFLQRLGMKLHVSQVTISCAMVMCHRFYMRQSHAKNDWQTIATSSLFLACKAEDEPCQLSSVVVASY--EIIYEWDPSASIRIHQTECYHEFKEIILSGESLLLSTSAFHLDIELPYKPLAAALNRLNAWPDLATAAWNFVHDWIR 209          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: FA58A_DANRE (Cyclin-related protein FAM58A OS=Danio rerio GN=fam58a PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-14
Identity = 53/167 (31.74%), Postives = 89/167 (53.29%), Query Frame = 3
Query:   84 TDEQLKDSPSRKDGID-EATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWN 581
            T     ++  R+   D E ++T  R+  C  I E+G+ L +    MAT  VL+HRF+   S   ++  +VA S++ LA K+EE   + R +I V HR     +  P+E     + KF EL+  + + E  IL+++ F    EHPHK++ +YL ++ +   L + AW+
Sbjct:    7 TSAAANEARGRRSAEDVEYSKTHFRV--CRFITETGVKLGMRSVPMATACVLYHRFFQSASLQIYEPYLVAMSAIHLAGKVEEQHLRTRDIINVCHRY-FHPDSEPLE----LNGKFWELRDSIVQCELLILRQLNFQVTFEHPHKYLLHYLLSVRS--LLNRHAWS 164          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: FA58A_MOUSE (Cyclin-related protein FAM58A OS=Mus musculus GN=Fam58a PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 6.749e-13
Identity = 46/151 (30.46%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  174 IQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLE----------TPLELRQEAWNLANDS 596
            I E+G+ L +    +AT   ++H+F+C+ +   +D+ +VA SS++LA K+EE   + R +I V HR        P+E       +F EL+  + + E  +L+ + F    +HPHK++ +YL +L+          TP+ +   AW L  DS
Sbjct:   36 IMEAGVKLGMQSIPIATACTIYHKFFCEINLDAYDLYLVAMSSIYLAGKVEEQHLRTRDIINVSHRY-FNPGSEPLE----LDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYLISLKNWLNRYSWQRTPISV--TAWALLRDS 179          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: FA58A_HUMAN (Cyclin-related protein FAM58A OS=Homo sapiens GN=FAM58A PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.814e-13
Identity = 46/162 (28.40%), Postives = 81/162 (50.00%), Query Frame = 3
Query:  135 ATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE--------LRQEAWNLANDS 596
            A E  +       I E+G+ L +    +AT   ++H+F+C+ +   +D  ++A SS++LA K+EE   + R +I V +R      G P+E       +F EL+  + + E  +L+ + F    +HPHK++ +YL +L+  L         +   AW L  DS
Sbjct:   21 APEARVHFRVARFIMEAGVKLGMRSIPIATACTIYHKFFCETNLDAYDPYLIAMSSIYLAGKVEEQHLRTRDIINVSNRY-FNPSGEPLE----LDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYLVSLQNWLNRHSWQRTPVAVTAWALLRDS 177          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: FA58A_RAT (Cyclin-related protein FAM58A OS=Rattus norvegicus GN=Fam58a PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.151e-12
Identity = 46/151 (30.46%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  174 IQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLE----------TPLELRQEAWNLANDS 596
            I E+G+ L +    +AT   ++H+F+C+ +   +D+ +VA SS++LA K+EE   + R +I V HR        P+E       +F EL+  + + E  +L+ + F    +HPHK++ +YL +L+          TP+ +   AW L  DS
Sbjct:   36 IMEAGVKLGMQSIPIATACTIYHKFFCEINLDAYDLYLVAMSSLYLAGKVEEQHLRTRDIINVSHRY-FNPGSEPLE----LDSRFWELRDSIVQCELLMLRVLRFQVSFQHPHKYLLHYLISLKNWLNRYSWQRTPISV--TAWALLRDS 179          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: FA58A_XENLA (Cyclin-related protein FAM58A OS=Xenopus laevis GN=fam58a PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.964e-12
Identity = 45/149 (30.20%), Postives = 75/149 (50.34%), Query Frame = 3
Query:  174 IQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLE--------LRQEAWNLANDS 596
            I E+G+ L +    +AT   ++H+FY + S   +D  +VA S+++LA K+EE   + R +I V HR        P+E       KF EL+  +   E  +L+ + F    +HPHK++ +YL +L+  +         +   AW L  DS
Sbjct:   30 IMEAGVKLGMHSVPIATACTIYHKFYKETSLENYDPHLVAMSAIYLAGKVEEQHLRTRDIINVCHRYN-NPGSEPLE----VDSKFWELRDNIVHCELLMLRMLNFRVSFQHPHKYLLHYLISLKNWMNRHSWERTPIATAAWALLRDS 173          
BLAST of DN617477 vs. ExPASy Swiss-Prot
Match: CCNC_DICDI (Cyclin-C OS=Dictyostelium discoideum GN=cycC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 48/168 (28.57%), Postives = 80/168 (47.62%), Query Frame = 3
Query:   99 KDSPSRKDGIDEATETTLRIYGCDLIQESGILLKLPQAVMATGQVLFHRFYCKRSFARFDVKIVAASSVWLASKLEESPRKARQVIIVFHRMECRREGLPIEHLDLFSKKFSELKMEMSRTERHILKEMGFVCHVEHPHKFISNYLATLETPLELRQEAWNLANDSLR 602
            + +P  K  +       LR + C +IQ  G  LKL Q  ++T  V F RFY K SF   + ++VA + ++L+SK+EE   +A+         +C  +   I+H       F+ L  ++   E  +L+E+ F   + HP+K +  YL +        +  W + NDS R
Sbjct:   23 ESNPKDKQYLTPIELKKLRTHYCFVIQNLGNALKLRQRAISTAIVYFKRFYLKNSFVDCEPRLVAVTCLYLSSKVEECITQAK---------KCAAKMKEIDH------SFNYLMNDILECEFFVLEELDFCLIIYHPYKSLPFYLQSSGLDPASIEIIWGIVNDSYR 175          
The following BLAST results are available for this feature:
BLAST of DN617477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CCNK_MOUSE4.994e-1631.28Cyclin-K OS=Mus musculus GN=Ccnk PE=1 SV=2[more]
CCT13_ARATH2.478e-1530.51Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=... [more]
FA58A_DANRE2.098e-1431.74Cyclin-related protein FAM58A OS=Danio rerio GN=fa... [more]
FA58A_MOUSE6.749e-1330.46Cyclin-related protein FAM58A OS=Mus musculus GN=F... [more]
FA58A_HUMAN8.814e-1328.40Cyclin-related protein FAM58A OS=Homo sapiens GN=F... [more]
FA58A_RAT1.151e-1230.46Cyclin-related protein FAM58A OS=Rattus norvegicus... [more]
FA58A_XENLA1.964e-1230.20Cyclin-related protein FAM58A OS=Xenopus laevis GN... [more]
CCNC_DICDI9.746e-1228.57Cyclin-C OS=Dictyostelium discoideum GN=cycC PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617477 ID=DN617477; Name=DN617477; organism=Citrus sinensis; type=EST; length=602bp
TGCCGAGGCAAATCCTCCAGGTAGTTGAAAGTGAGGGATCTTGAGCAAGA
ATGATTTACACGGCAATTGATAATTTTTACCTAACAGATGAGCAGCTAAA
GGACTCACCGTCTAGAAAAGATGGCATTGATGAAGCAACAGAAACCACTT
TGAGAATCTATGGCTGTGACCTCATTCAAGAAAGTGGAATTTTGCTTAAA
TTACCGCAAGCTGTAATGGCTACTGGTCAGGTTTTATTCCATCGTTTCTA
TTGCAAGAGATCATTTGCTCGTTTTGATGTGAAGATAGTGGCTGCTAGTT
CCGTATGGCTTGCATCAAAGCTGGAGGAGAGCCCTCGGAAAGCAAGGCAA
GTAATCATTGTTTTCCATAGAATGGAATGCAGAAGGGAGGGCTTACCCAT
AGAGCATTTGGATTTGTTTTCAAAGAAATTTTCAGAATTGAAAATGGAAA
TGAGCAGAACAGAAAGACATATATTGAAAGAGATGGGCTTTGTTTGTCAC
GTTGAACACCCTCACAAATTCATATCAAACTACCTTGCCACCCTTGAGAC
ACCTCTAGAATTGAGACAGGAAGCTTGGAATCTAGCAAATGATAGTCTGC
GC
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