DN617475

Overview
NameDN617475
Unique NameDN617475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_SALRD (Elongation factor Tu OS=Salinibacter ruber (strain DSM 13855) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.286e-20
Identity = 59/154 (38.31%), Postives = 84/154 (54.55%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            +EK H+N+  IGHVD GK+T T         I K + ER    A    +++F+    +D    ERERGITI  +  ++ET   +   +D PGH D++KNM+TG +Q D A+L++ S  G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 REKPHVNVGTIGHVDHGKTTLTA-------AITKVLAERVGGAA----EQTFE---AIDNAPEERERGITIATSHVEYETENRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVGSDDGPMP-------QTREHILLARQVGVPYLVVFMNKTD 140          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_PLARO (Elongation factor Tu OS=Planobispora rosea GN=tuf PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 9.286e-20
Identity = 60/155 (38.71%), Postives = 87/155 (56.13%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS-FKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+NI  IGH+D GK+T T         I K + +R+     E+NK + F     +DK   E+ RGITI IA  +++T K +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHMNIGTIGHIDHGKTTLTA-------AITKVLHDRYP----ELNKATPFDK---IDKAPEEKARGITISIAHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKAD 141          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_PELUB (Elongation factor Tu OS=Pelagibacter ubique GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.286e-20
Identity = 57/171 (33.33%), Postives = 86/171 (50.29%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKE 590
            + K H NI  IGHVD GK+T T  +   L  +       +++               +DK   E+ERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++++  G          QTREH LL   +G+  ++   NK+D    K      +E ++E
Sbjct:    8 RNKPHCNIGTIGHVDHGKTTLTAAITITLAELGGGKAVAYDQ---------------IDKAPEEKERGITISTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMP-------QTREHILLGRQVGIPAIVVYLNKVDQVDDKDMIELVEEEIRE 156          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_NOCSJ (Elongation factor Tu OS=Nocardioides sp. (strain BAA-499 / JS614) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.286e-20
Identity = 58/154 (37.66%), Postives = 83/154 (53.90%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+NI  IGH+D GK+T T         I K + +++       +   F     +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTA-------AITKVLHDKYP------DLNPFTPFDEIDKAPEERQRGITISIAHVEYQTESRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPALVVALNKCD 141          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_LEUCK (Elongation factor Tu OS=Leuconostoc citreum (strain KM20) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.286e-20
Identity = 59/154 (38.31%), Postives = 84/154 (54.55%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+NI  IGHVD GK+T T         I K + E+    A +  +        +D    E+ERGITI+ +  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV+ ++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AISKVLAEKQGITATDFAE--------IDNAPEEKERGITINTSHIEYETETRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVEYLVVFLNKTD 139          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_FLAPJ (Elongation factor Tu OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.286e-20
Identity = 55/154 (35.71%), Postives = 82/154 (53.25%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+NI  IGHVD GK+T T              I +   +A     +SF     +D    E+ERGITI+ +  ++ET   +   +D PGH D++KNM+TG +Q D A+L++ +T G          QTREH LL   +G+ +M+   NK+D
Sbjct:    8 RSKPHLNIGTIGHVDHGKTTLTA------------AITKVLSDAGYCQAKSFDQ---IDNAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDGPMP-------QTREHILLGRQVGIPRMVVFMNKVD 139          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_FLAFE (Elongation factor Tu OS=Flavobacterium ferrugineum GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.286e-20
Identity = 58/154 (37.66%), Postives = 84/154 (54.55%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            +EK H+NI  IGHVD GK+T T  +   L           +K  A+  K        +D    E+ERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ ++ G          QT+EH LLA  +GV +M+   NK+D
Sbjct:    8 REKPHVNIGTIGHVDHGKTTLTAAITDILS----------KKGLAQAKKYD-----EIDGAPEEKERGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAASDGPMP-------QTKEHILLAAQVGVPKMVVFLNKVD 139          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_DESVV (Elongation factor Tu OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.286e-20
Identity = 61/161 (37.89%), Postives = 83/161 (51.55%), Query Frame = 3
Query:   72 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            MGKEK      H+NI  IGH+D GK+T T  +                K A  + +  F     +DK   E+ERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    1 MGKEKFERKKPHVNIGTIGHIDHGKTTLTAAIT---------------KTAGLLGQGKFIAYDEIDKAPEEKERGITIATAHVEYETATRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGPMP-------QTREHILLARQVGVPYIVVFLNKCD 139          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_DESVH (Elongation factor Tu OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.286e-20
Identity = 61/161 (37.89%), Postives = 83/161 (51.55%), Query Frame = 3
Query:   72 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            MGKEK      H+NI  IGH+D GK+T T  +                K A  + +  F     +DK   E+ERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    1 MGKEKFERKKPHVNIGTIGHIDHGKTTLTAAIT---------------KTAGLLGQGKFIAYDEIDKAPEEKERGITIATAHVEYETATRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGPMP-------QTREHILLARQVGVPYIVVFLNKCD 139          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_CYTH3 (Elongation factor Tu OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.286e-20
Identity = 58/154 (37.66%), Postives = 83/154 (53.90%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+N+  IGHVD GK+T T  +   L   DK + E          KR F     +D    E+ERGITI+ +  ++ T   +   +D PGH D++KNM+TG +Q D A+L++ +T G          QTREH LLA  +GV  M+   NK+D
Sbjct:    8 RSKPHVNVGTIGHVDHGKTTLTAAITKVLA--DKGLAE----------KRDFSQ---IDNAPEEKERGITINTSHVEYATATRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVPAMVVFMNKVD 139          
The following BLAST results are available for this feature:
BLAST of DN617475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_SALRD9.286e-2038.31Elongation factor Tu OS=Salinibacter ruber (strain... [more]
EFTU_PLARO9.286e-2038.71Elongation factor Tu OS=Planobispora rosea GN=tuf ... [more]
EFTU_PELUB9.286e-2033.33Elongation factor Tu OS=Pelagibacter ubique GN=tuf... [more]
EFTU_NOCSJ9.286e-2037.66Elongation factor Tu OS=Nocardioides sp. (strain B... [more]
EFTU_LEUCK9.286e-2038.31Elongation factor Tu OS=Leuconostoc citreum (strai... [more]
EFTU_FLAPJ9.286e-2035.71Elongation factor Tu OS=Flavobacterium psychrophil... [more]
EFTU_FLAFE9.286e-2037.66Elongation factor Tu OS=Flavobacterium ferrugineum... [more]
EFTU_DESVV9.286e-2037.89Elongation factor Tu OS=Desulfovibrio vulgaris sub... [more]
EFTU_DESVH9.286e-2037.89Elongation factor Tu OS=Desulfovibrio vulgaris (st... [more]
EFTU_CYTH39.286e-2037.66Elongation factor Tu OS=Cytophaga hutchinsonii (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617475 ID=DN617475; Name=DN617475; organism=Citrus sinensis; type=EST; length=591bp
GTTTCTGCAAGTCGGCGAGAGAGAAACCTTTTAGCAAATTTCATATCAAG
GTTTTATACTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAACAT
TGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACT
TGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAG
AAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCT
CGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCT
TGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCCC
GGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGA
CTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTA
TCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTT
GGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCC
CAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGG
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