DN617475

Overview
NameDN617475
Unique NameDN617475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_TAXOC (Elongation factor Tu OS=Taxeobacter ocellatus GN=tuf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.213e-19
Identity = 59/154 (38.31%), Postives = 82/154 (53.25%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+NI  IGHVD GK+T T  +   L            K  A   KR F     +D    E+ERGITI+ A  ++ T   +   +D PGH D++KNM+TG +Q D A+L++ +T G          QTREH LLA  +GV Q++   NK+D
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLAN----------KGLAA--KRDFSS---IDNAPEEKERGITINTAHVEYSTANRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVPQLVVFMNKVD 139          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_SYNS9 (Elongation factor Tu OS=Synechococcus sp. (strain CC9902) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.213e-19
Identity = 56/154 (36.36%), Postives = 80/154 (51.95%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+NI  IGHVD GK+T T  +   L    +  ++ +                 +D    ERERGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L+  +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTAAITNVLAKKGQAQVQNYAD---------------IDGAPEERERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPM-------AQTKEHILLAKQVGVPALVVALNKCD 139          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_SYNJB (Elongation factor Tu OS=Synechococcus sp. GN=tuf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.213e-19
Identity = 52/154 (33.77%), Postives = 81/154 (52.60%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+N+  IGHVD GK+T T  +   L  + +   +R+++               +D    E+ RGITI+ A  +++T   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAAITTTLAALGQATAKRYDE---------------IDAAPEEKARGITINTAHVEYQTANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPSLVVFLNKAD 139          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_SULMW (Elongation factor Tu OS=Sulcia muelleri (strain GWSS) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.213e-19
Identity = 56/162 (34.57%), Postives = 83/162 (51.23%), Query Frame = 3
Query:   69 IMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 554
            I  ++K H+NI  IGHVD GK+T T  +   L      V + F                 +D    E+ERGITI+ +  +++T   +   +D PGH D++KNM+TG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK+D    K
Sbjct:    5 IFRRDKPHLNIGTIGHVDHGKTTLTASITKVLAKKGLAVAKEFSS---------------IDNAPEEKERGITINTSHVEYQTEIRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVPNLVVFMNKVDQVDDK 144          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_STRPB (Elongation factor Tu OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=tuf PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.213e-19
Identity = 64/155 (41.29%), Postives = 85/155 (54.84%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERER-GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+NI  IGHVD GK+T T  +          V+ R    +    K    YA + D    ERER GITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLARRLPSSVNQPK---DYASI-DAAPEERERAGITINTAHVEYETATRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVD 143          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_SPHWW (Elongation factor Tu OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.213e-19
Identity = 58/154 (37.66%), Postives = 80/154 (51.95%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H NI  IGHVD GK++ T  +                K  AE    +F     +DK   ERERGITI  A  ++ET + +   +D PGH D++KNMITG +Q D  +L++ +T G          QTREH LLA  +GV  ++   NK+D
Sbjct:    8 RTKPHCNIGTIGHVDHGKTSLTAAIT---------------KVLAETGGATFVDYANIDKAPEERERGITISTAHVEYETEQRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMP-------QTREHILLARQVGVPALVVFMNKVD 139          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_MYCPE (Elongation factor Tu OS=Mycoplasma penetrans GN=tuf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.213e-19
Identity = 57/154 (37.01%), Postives = 83/154 (53.90%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+NI  IGH+D GK+T T  +   L              A +   ++ KY  + DK   E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ ++ G          QTREH LLA  +GV +M+   NK D
Sbjct:    8 RSKAHVNIGTIGHIDHGKTTLTAAICTYL--------------AKKGGAKAMKYDEI-DKAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAASDGPMP-------QTREHILLARQVGVPKMVVFLNKCD 139          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_MYCA9 (Elongation factor Tu OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.213e-19
Identity = 59/156 (37.82%), Postives = 87/156 (55.77%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFE--KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+NI  IGHVD GK+T T         I K + +++    EA+  ++        +D    E+ RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKYPDLNEASAFDQ--------IDNAPEEKARGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSD 141          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_LACAC (Elongation factor Tu OS=Lactobacillus acidophilus GN=tuf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.213e-19
Identity = 61/154 (39.61%), Postives = 82/154 (53.25%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+NI  IGHVD GK+T T  +   L           EK  A+    S      +D    E+ERGITI+ A  ++ET   +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D
Sbjct:    9 RTKPHVNIGTIGHVDHGKTTLTAAITTVLA----------EKGLAKAEDYS-----QIDAAPEEKERGITINTAHVEYETENRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVNYIVVFLNKCD 140          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_DESDA (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.213e-19
Identity = 62/161 (38.51%), Postives = 83/161 (51.55%), Query Frame = 3
Query:   72 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            MGKEK      H+NI  IGH+D GK+T T  +                K A   +   F     +DK   E+ERGITI  +  ++ET K +   +D PGH D+IKNMITG +Q D  +L++ +T G          QTREH LLA  +GV Q++   NK D
Sbjct:    1 MGKEKFERKKPHVNIGTIGHIDHGKTTLTAAIT---------------KVANLKSGGKFISYDEIDKAPEEKERGITIATSHVEYETDKRHYAHVDCPGHADYIKNMITGAAQMDGGILVVAATDGPMP-------QTREHILLARQVGVPQLVVFLNKCD 139          
The following BLAST results are available for this feature:
BLAST of DN617475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_TAXOC1.213e-1938.31Elongation factor Tu OS=Taxeobacter ocellatus GN=t... [more]
EFTU_SYNS91.213e-1936.36Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SYNJB1.213e-1933.77Elongation factor Tu OS=Synechococcus sp. GN=tuf P... [more]
EFTU_SULMW1.213e-1934.57Elongation factor Tu OS=Sulcia muelleri (strain GW... [more]
EFTU_STRPB1.213e-1941.29Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_SPHWW1.213e-1937.66Elongation factor Tu OS=Sphingomonas wittichii (st... [more]
EFTU_MYCPE1.213e-1937.01Elongation factor Tu OS=Mycoplasma penetrans GN=tu... [more]
EFTU_MYCA91.213e-1937.82Elongation factor Tu OS=Mycobacterium abscessus (s... [more]
EFTU_LACAC1.213e-1939.61Elongation factor Tu OS=Lactobacillus acidophilus ... [more]
EFTU_DESDA1.213e-1938.51Elongation factor Tu OS=Desulfovibrio desulfurican... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617475 ID=DN617475; Name=DN617475; organism=Citrus sinensis; type=EST; length=591bp
GTTTCTGCAAGTCGGCGAGAGAGAAACCTTTTAGCAAATTTCATATCAAG
GTTTTATACTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAACAT
TGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACT
TGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAG
AAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCT
CGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCT
TGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCCC
GGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGA
CTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTA
TCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTT
GGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCC
CAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGG
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