DN617475

Overview
NameDN617475
Unique NameDN617475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9903 contig Csv1_Contig9903:32..622. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_FUSNN (Elongation factor Tu OS=Fusobacterium nucleatum subsp. nucleatum GN=tuf PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.584e-19
Identity = 57/154 (37.01%), Postives = 81/154 (52.60%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+NI  IGHVD GK+TTT              I +   +    +K  F     +D    E+ERGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NK D
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTTTA------------AISKVLSDKGWASKVDFDQ---IDAAPEEKERGITINTAHIEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLSRQVGVPYIVVYLNKSD 139          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_FRAAA (Elongation factor Tu OS=Frankia alni (strain ACN14a) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.584e-19
Identity = 57/154 (37.01%), Postives = 80/154 (51.95%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+NI  IGH+D GK+T T  +   L               A  +   F     +DK   E+ RGITI IA  +++T K +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTAAITKVL-------------HDAHPDLNPFTPFDQIDKAPEEKARGITISIAHVEYQTDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP-------QTKEHVLLARQVGVPYIVVALNKAD 141          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_CLOPS (Elongation factor Tu OS=Clostridium perfringens (strain SM101 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.584e-19
Identity = 58/154 (37.66%), Postives = 80/154 (51.95%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+NI  IGHVD GK+T T  +   L              A      +FKY  + DK   E+ERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L+  +  G          QTREH LL+  +GV  ++   NK D
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVL--------------AQAGGAEAFKYDEI-DKAPEEKERGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMP-------QTREHILLSSRVGVDHIVVFLNKAD 139          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_CLOPE (Elongation factor Tu OS=Clostridium perfringens GN=tufA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.584e-19
Identity = 58/154 (37.66%), Postives = 80/154 (51.95%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+NI  IGHVD GK+T T  +   L              A      +FKY  + DK   E+ERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L+  +  G          QTREH LL+  +GV  ++   NK D
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVL--------------AQAGGAEAFKYDEI-DKAPEEKERGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMP-------QTREHILLSSRVGVDHIVVFLNKAD 139          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_CLOP1 (Elongation factor Tu OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.584e-19
Identity = 58/154 (37.66%), Postives = 80/154 (51.95%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+NI  IGHVD GK+T T  +   L              A      +FKY  + DK   E+ERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L+  +  G          QTREH LL+  +GV  ++   NK D
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVL--------------AQAGGAEAFKYDEI-DKAPEEKERGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMP-------QTREHILLSSRVGVDHIVVFLNKAD 139          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_CLOB8 (Elongation factor Tu OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.584e-19
Identity = 58/154 (37.66%), Postives = 83/154 (53.90%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+NI  IGHVD GK+T T  +   L            K  AE    +F YA + DK   E+ERGITI+ A  +++T   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LL   +G++ ++   NK D
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLAN----------KGFAE----AFNYADI-DKAPEEKERGITINTAHVEYQTENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLGSRVGIQYIVVFLNKAD 139          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_CALS8 (Elongation factor Tu OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.584e-19
Identity = 58/154 (37.66%), Postives = 79/154 (51.30%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+NI  IGHVD GK+T T  +                K  A   K  F     +DK   ERERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  + V  ++   NK+D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAIT---------------KVLALKGKAQFMAYDQIDKAPEERERGITINTAHVEYETDARHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVNVPYIVVFLNKVD 139          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_BDEBA (Elongation factor Tu OS=Bdellovibrio bacteriovorus GN=tuf PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.584e-19
Identity = 56/159 (35.22%), Postives = 79/159 (49.69%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 554
            + K H+NI  IGHVD GK+T T  +   L    K     +++               +DK   E+ RGITI     ++ET   +   +D PGH D++KNMITG +Q D A+L++ S  G          QTREH LLA  +GV  ++   NK+D    K
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTAAITTTLAASGKAQAMAYDQ---------------IDKSPEEKARGITISTTHVEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSSADGPMP-------QTREHILLARQVGVPALVVFMNKVDMVDDK 144          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_ANATD (Elongation factor Tu OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.584e-19
Identity = 58/154 (37.66%), Postives = 79/154 (51.30%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMD 539
            + K H+NI  IGHVD GK+T T  +                K  A   K  F     +DK   ERERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  + V  ++   NK+D
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAIT---------------KVLALKGKAQFMAYDQIDKAPEERERGITINTAHVEYETDARHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVNVPYIVVFLNKVD 139          
BLAST of DN617475 vs. ExPASy Swiss-Prot
Match: EFTU_ACICJ (Elongation factor Tu OS=Acidiphilium cryptum (strain JF-5) GN=tuf PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.584e-19
Identity = 58/158 (36.71%), Postives = 79/158 (50.00%), Query Frame = 3
Query:   78 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTP 551
            + K H NI  IGHVD GK++ T  +                K  AE    +F+    +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NKMD   P
Sbjct:    8 RTKPHCNIGTIGHVDHGKTSLTAAIT---------------KVLAESGGATFRAYDSIDAAPEERARGITIATAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPALVVFLNKMDMADP 143          
The following BLAST results are available for this feature:
BLAST of DN617475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_FUSNN1.584e-1937.01Elongation factor Tu OS=Fusobacterium nucleatum su... [more]
EFTU_FRAAA1.584e-1937.01Elongation factor Tu OS=Frankia alni (strain ACN14... [more]
EFTU_CLOPS1.584e-1937.66Elongation factor Tu OS=Clostridium perfringens (s... [more]
EFTU_CLOPE1.584e-1937.66Elongation factor Tu OS=Clostridium perfringens GN... [more]
EFTU_CLOP11.584e-1937.66Elongation factor Tu OS=Clostridium perfringens (s... [more]
EFTU_CLOB81.584e-1937.66Elongation factor Tu OS=Clostridium beijerinckii (... [more]
EFTU_CALS81.584e-1937.66Elongation factor Tu OS=Caldicellulosiruptor sacch... [more]
EFTU_BDEBA1.584e-1935.22Elongation factor Tu OS=Bdellovibrio bacteriovorus... [more]
EFTU_ANATD1.584e-1937.66Elongation factor Tu OS=Anaerocellum thermophilum ... [more]
EFTU_ACICJ1.584e-1936.71Elongation factor Tu OS=Acidiphilium cryptum (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617475 ID=DN617475; Name=DN617475; organism=Citrus sinensis; type=EST; length=591bp
GTTTCTGCAAGTCGGCGAGAGAGAAACCTTTTAGCAAATTTCATATCAAG
GTTTTATACTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAACAT
TGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACT
TGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAG
AAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGTGCT
CGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCT
TGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCCC
GGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGA
CTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTA
TCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTT
GGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCACCCC
CAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGG
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