DN617474

Overview
NameDN617474
Unique NameDN617474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:1133..1749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_ARXAD (Elongation factor 1-alpha OS=Arxula adeninivorans GN=TEF PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.526e-35
Identity = 68/89 (76.40%), Postives = 80/89 (89.89%), Query Frame = -1
Query:  351 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 617
            Y+PVLDCHT+HIA +F EL+ KIDRRSGK++E  PKF+K GDA +V+MIP+KPM VETF++YPPLGRFAVRDMRQTVAVGVIKSVEK D
Sbjct:  355 YSPVLDCHTAHIACRFDELIEKIDRRSGKKVEDSPKFVKAGDAAIVRMIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVIKSVEKSD 443          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.113e-34
Identity = 71/88 (80.68%), Postives = 79/88 (89.77%), Query Frame = -1
Query:  354 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 617
            YAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V MIP KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  357 YAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_ASPOR (Elongation factor 1-alpha OS=Aspergillus oryzae GN=tef1 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.113e-34
Identity = 68/87 (78.16%), Postives = 81/87 (93.10%), Query Frame = -1
Query:  357 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 617
            YAPVLDCHT+HIA KF+EL+ KIDRR+GK +E +PKF+K+GDA +VKMIP+KPM VE+F+D+PPLGRFAVRDMRQTVAVGVIKSVEK
Sbjct:  356 YAPVLDCHTAHIACKFAELLEKIDRRTGKSVEDKPKFIKSGDAAIVKMIPSKPMCVESFTDFPPLGRFAVRDMRQTVAVGVIKSVEK 442          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 67/92 (72.83%), Postives = 82/92 (89.13%), Query Frame = -1
Query:  342 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 617
            YAPVLDCHT+HIA KFSEL+ KIDRR+GK +E  PKF+K+GDA +VK++P+KPM VE++++YPPLGRFAVRDMRQTVAVGVIKSVEK +  G
Sbjct:  357 YAPVLDCHTAHIACKFSELIEKIDRRTGKTMEAAPKFVKSGDAAIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGVIKSVEKTEGKG 448          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A1_RAT (Elongation factor 1-alpha 1 OS=Rattus norvegicus GN=Eef1a1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 70/88 (79.55%), Postives = 79/88 (89.77%), Query Frame = -1
Query:  354 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 617
            YAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  357 YAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A1_RABIT (Elongation factor 1-alpha 1 OS=Oryctolagus cuniculus GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 70/88 (79.55%), Postives = 79/88 (89.77%), Query Frame = -1
Query:  354 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 617
            YAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  357 YAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A1_PONAB (Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF1A1 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 70/88 (79.55%), Postives = 79/88 (89.77%), Query Frame = -1
Query:  354 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 617
            YAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  357 YAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A1_PANTR (Elongation factor 1-alpha 1 OS=Pan troglodytes GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 70/88 (79.55%), Postives = 79/88 (89.77%), Query Frame = -1
Query:  354 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 617
            YAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  357 YAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A1_MOUSE (Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef1a1 PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 70/88 (79.55%), Postives = 79/88 (89.77%), Query Frame = -1
Query:  354 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 617
            YAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  357 YAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A1_HUMAN (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 70/88 (79.55%), Postives = 79/88 (89.77%), Query Frame = -1
Query:  354 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 617
            YAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  357 YAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
The following BLAST results are available for this feature:
BLAST of DN617474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
EF1A_ARXAD8.526e-3576.40Elongation factor 1-alpha OS=Arxula adeninivorans ... [more]
EF1A_CHICK1.113e-3480.68Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE... [more]
EF1A_ASPOR1.113e-3478.16Elongation factor 1-alpha OS=Aspergillus oryzae GN... [more]
EF1A_PIRIN1.454e-3472.83Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A1_RAT1.454e-3479.55Elongation factor 1-alpha 1 OS=Rattus norvegicus G... [more]
EF1A1_RABIT1.454e-3479.55Elongation factor 1-alpha 1 OS=Oryctolagus cunicul... [more]
EF1A1_PONAB1.454e-3479.55Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF... [more]
EF1A1_PANTR1.454e-3479.55Elongation factor 1-alpha 1 OS=Pan troglodytes GN=... [more]
EF1A1_MOUSE1.454e-3479.55Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef... [more]
EF1A1_HUMAN1.454e-3479.55Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617474 ID=DN617474; Name=DN617474; organism=Citrus sinensis; type=EST; length=617bp
ATAATAATCAAAGAGCTTAAAATGAGCTTCCAAATGTATTAAAACCACCA
ACTTTGACATCCAGCAGCTGGTCTATAAACTTCACAACTCAATTTAGTGC
TATTAACCAAATTCAGAATATAAAAATCCGAACACCCACCACAGCCAGTT
AAGCAGAAAGATAACATCCCAATTGCTCAACAGCAAACTGGTGGAAGCAA
ATAGGGCTGTTTGCAGAAACATTGATGCAAAACAAAAACAGACAAGAAAA
TAAAAAAAGACAGAAAATAAACCCTAACTATTGTAGACAGACCCATAAAA
ATTTCTCATTTCTTCTTGGCTGCGGACTTGGTGACCTTCGCACCTGTGGG
ATCCTTCTTCTCAACACTCTTGATAACACCCACAGCAACAGTCTGACGCA
TGTCCCTAACAGCAAAACGACCAAGGGGTGGGTAATCGGAGAAGGTTTCA
ACAACCATGGGCTTGGTGGGAATCATCTTAACCATTCCGGCGTCTCCATT
CTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAA
TCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGTGTGGCAG
TCAAGCACTGGGGCATA
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