DN617474

Overview
NameDN617474
Unique NameDN617474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:1133..1749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A1_FELCA (Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 70/88 (79.55%), Postives = 79/88 (89.77%), Query Frame = -1
Query:  354 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 617
            YAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  357 YAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A1_CRIGR (Elongation factor 1-alpha 1 OS=Cricetulus griseus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 70/88 (79.55%), Postives = 79/88 (89.77%), Query Frame = -1
Query:  354 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 617
            YAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  357 YAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A1_BOVIN (Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.454e-34
Identity = 70/88 (79.55%), Postives = 79/88 (89.77%), Query Frame = -1
Query:  354 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 617
            YAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PKFLK+GDA +V M+P KPM VE+FSDYPPLGRFAVRDMRQTVAVGVIK+V+KK
Sbjct:  357 YAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVIKAVDKK 444          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.899e-34
Identity = 66/92 (71.74%), Postives = 83/92 (90.22%), Query Frame = -1
Query:  342 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 617
            YAPVLDCHT+HIA KF+EL+ KIDRR+GK LE  PKF+K+GDA +VK++P+KPM VE++++YPPLGRFAVRDMRQTVAVG+IKSV+K D +G
Sbjct:  355 YAPVLDCHTAHIACKFAELLEKIDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDMRQTVAVGIIKSVDKTDKSG 446          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_PODAN (Elongation factor 1-alpha OS=Podospora anserina GN=TEF PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.481e-34
Identity = 67/87 (77.01%), Postives = 79/87 (90.80%), Query Frame = -1
Query:  357 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 617
            YAPVLDCHT+HIA KFSEL+ KIDRR+GK +E+ PKF+K+GDA +VKM+P+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK VEK
Sbjct:  356 YAPVLDCHTAHIACKFSELLQKIDRRTGKAVEESPKFIKSGDAAIVKMVPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_ASHGO (Elongation factor 1-alpha OS=Ashbya gossypii GN=TEF PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.240e-34
Identity = 69/92 (75.00%), Postives = 77/92 (83.70%), Query Frame = -1
Query:  342 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTG 617
            Y+PVLDCHT+HIA KF EL+ K DRR+GK+LE  PKFLK GDA MVK +P+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIKSV K D  G
Sbjct:  355 YSPVLDCHTAHIACKFDELLEKNDRRTGKKLEDSPKFLKAGDAAMVKFVPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKSVVKSDKAG 446          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.231e-34
Identity = 67/87 (77.01%), Postives = 79/87 (90.80%), Query Frame = -1
Query:  357 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 617
            YAPVLDCHT+HIA KF+EL+ KIDRR+GK +E  PKF+K+GDA +VKMIP+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+V+K
Sbjct:  356 YAPVLDCHTAHIACKFAELLEKIDRRTGKAVETSPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_PODCU (Elongation factor 1-alpha OS=Podospora curvicolla GN=TEF PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.231e-34
Identity = 67/87 (77.01%), Postives = 79/87 (90.80%), Query Frame = -1
Query:  357 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 617
            YAPVLDCHT+HIA KF+EL+ KIDRR+GK +E+ PKF+K+GDA +VKMIP+KPM VE F++YPPLGRFAVRDMRQTVAVGVIK VEK
Sbjct:  356 YAPVLDCHTAHIACKFAELLQKIDRRTGKAVEESPKFIKSGDAAIVKMIPSKPMCVEAFTEYPPLGRFAVRDMRQTVAVGVIKKVEK 442          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 4.231e-34
Identity = 67/87 (77.01%), Postives = 79/87 (90.80%), Query Frame = -1
Query:  357 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 617
            YAPVLDCHT+HIA KF+EL+ KIDRR+GK +E  PKF+K+GDA +VKMIP+KPM VE F+DYPPLGRFAVRDMRQTVAVGVIK+V+K
Sbjct:  356 YAPVLDCHTAHIACKFAELLEKIDRRTGKAVEASPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDMRQTVAVGVIKAVDK 442          
BLAST of DN617474 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.526e-34
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = -1
Query:  354 YAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 617
            YAPVLDCHT+HIA KF+EL  KIDRRSGK+LE  PK LK+GDA +V+M+P KPM VE+FS YPPLGRFAVRDMRQTVAVGVIKSVEKK
Sbjct:  357 YAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKALKSGDAAIVEMVPGKPMCVESFSTYPPLGRFAVRDMRQTVAVGVIKSVEKK 444          
The following BLAST results are available for this feature:
BLAST of DN617474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
EF1A1_FELCA1.454e-3479.55Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1... [more]
EF1A1_CRIGR1.454e-3479.55Elongation factor 1-alpha 1 OS=Cricetulus griseus ... [more]
EF1A1_BOVIN1.454e-3479.55Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A... [more]
EF1A_SCHCO1.899e-3471.74Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_PODAN2.481e-3477.01Elongation factor 1-alpha OS=Podospora anserina GN... [more]
EF1A_ASHGO3.240e-3475.00Elongation factor 1-alpha OS=Ashbya gossypii GN=TE... [more]
EF1A_SORMA4.231e-3477.01Elongation factor 1-alpha OS=Sordaria macrospora G... [more]
EF1A_PODCU4.231e-3477.01Elongation factor 1-alpha OS=Podospora curvicolla ... [more]
EF1A_NEUCR4.231e-3477.01Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A_DANRE5.526e-3479.55Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617474 ID=DN617474; Name=DN617474; organism=Citrus sinensis; type=EST; length=617bp
ATAATAATCAAAGAGCTTAAAATGAGCTTCCAAATGTATTAAAACCACCA
ACTTTGACATCCAGCAGCTGGTCTATAAACTTCACAACTCAATTTAGTGC
TATTAACCAAATTCAGAATATAAAAATCCGAACACCCACCACAGCCAGTT
AAGCAGAAAGATAACATCCCAATTGCTCAACAGCAAACTGGTGGAAGCAA
ATAGGGCTGTTTGCAGAAACATTGATGCAAAACAAAAACAGACAAGAAAA
TAAAAAAAGACAGAAAATAAACCCTAACTATTGTAGACAGACCCATAAAA
ATTTCTCATTTCTTCTTGGCTGCGGACTTGGTGACCTTCGCACCTGTGGG
ATCCTTCTTCTCAACACTCTTGATAACACCCACAGCAACAGTCTGACGCA
TGTCCCTAACAGCAAAACGACCAAGGGGTGGGTAATCGGAGAAGGTTTCA
ACAACCATGGGCTTGGTGGGAATCATCTTAACCATTCCGGCGTCTCCATT
CTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAA
TCTTCGTCACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGTGTGGCAG
TCAAGCACTGGGGCATA
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