DN617473

Overview
NameDN617473
Unique NameDN617473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617473_ssr89 microsatellite DN617473_ssr89:89..103. BLAST: Citrus ESTs to Prunus persica proteins V1
DN617473_ssr4 microsatellite DN617473_ssr4:4..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12782 contig Csv1_Contig12782:187..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617473 vs. ExPASy Swiss-Prot
Match: MA1A1_HUMAN (Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA OS=Homo sapiens GN=MAN1A1 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 8.474e-14
Identity = 51/149 (34.23%), Postives = 82/149 (55.03%), Query Frame = 3 
Query:  219 DRQTLVREHEVELSKLNEEATQLRNLLEEIK--------NNPANVIGKIDHIKQAKQPPGNKAFAEDPIDI---QRKQKVKDAMIHAWSSYEKYAWGQDELQPQTKNGVNS--FGGL-GATLIDALDTLYIMGLDEQFPRAREWIANSL 623
            + +  +RE +  L KL EE  Q   LLE+ K          P   +  +D +      P     + +P D    +++ K+K+ M HAW++Y+ YAWG +EL+P +K G +S  FG + GAT++DALDTL+IM +  +F  A+ W+  +L
Sbjct:  127 NHERALREAKETLQKLPEEI-QRDILLEKKKVAQDQLRDKAPFRGLPPVDFV------PPIGVESREPADAAIREKRAKIKEMMKHAWNNYKGYAWGLNELKPISKGGHSSSLFGNIKGATIVDALDTLFIMEMKHEFEEAKSWVEENL 268
[Close]
BLAST of DN617473 vs. ExPASy Swiss-Prot
Match: MA122_DROME (Mannosyl-oligosaccharide alpha-1,2-mannosidase isoform B OS=Drosophila melanogaster GN=alpha-Man-I PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.446e-13
Identity = 35/75 (46.67%), Postives = 53/75 (70.67%), Query Frame = 3 
Query:  399 IDIQRKQKVKDAMIHAWSSYEKYAWGQDELQP--QTKNGVNSFGG--LGATLIDALDTLYIMGLDEQFPRAREWI 611
            ID +++ +V   M HAW +Y+ YAWG++EL+P  Q  +  + FG   LGAT++D LDTLYIMGL++++   R+WI
Sbjct:  172 IDYEKRNQVVKMMEHAWHNYKLYAWGKNELRPLSQRPHSASIFGSYDLGATIVDGLDTLYIMGLEKEYREGRDWI 246
The following BLAST results are available for this feature:
BLAST of DN617473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
MA1A1_HUMAN8.474e-1434.23Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA ... [more]
MA122_DROME1.446e-1346.67Mannosyl-oligosaccharide alpha-1,2-mannosidase iso... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01E02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617473 ID=DN617473; Name=DN617473; organism=Citrus sinensis; type=EST; length=624bp
TTAAAAATAAAATAAAATAAAATAGTTGATTTAGGAGTTCAGCTTTTGTT
GTTAGATCTAATTTAATCAATCAGATGGCGAGGAATAGATCATCATCATC
ATCATTATCATCATCAAGTGGCAAATTGAGATACTGTAATCCGGCGTATT
ACCTGAAGAGACCGAAGCGTTTGGCTATGCTTTTGATCGTGTTTGTTTCT
GTTACTCTGGTCGTTTGGGATCGCCAGACTCTTGTTAGAGAACACGAGGT
TGAACTTTCCAAGTTAAATGAAGAAGCTACTCAATTGCGAAATCTGCTGG
AAGAGATAAAGAATAACCCTGCCAATGTAATTGGAAAAATTGATCACATA
AAACAAGCTAAACAGCCCCCTGGAAACAAGGCATTTGCGGAGGATCCTAT
TGATATCCAGCGAAAACAGAAAGTAAAAGATGCTATGATTCATGCATGGA
GTTCATATGAGAAGTATGCATGGGGCCAAGATGAACTTCAGCCACAGACT
AAGAATGGGGTCAACAGCTTTGGTGGTCTTGGAGCAACACTAATTGATGC
TCTCGATACATTATACATAATGGGTCTGGATGAACAATTTCCAAGAGCTA
GAGAGTGGATTGCGAACTCGTTGG
back to top