DN617471

Overview
NameDN617471
Unique NameDN617471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12590 contig Csv1_Contig12590:36..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.654e-70
Identity = 121/224 (54.02%), Postives = 154/224 (68.75%), Query Frame = 1
Query:  133 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGPSLSFQVTASDGRTVTSNHVVPANWQFGQTFE 795
            G W+  HATFY              Y +   +GYG  T A+ST LF  G  CG+CYE+KC + P  C  G+  ++VTATN CPPN   SNDNGGWCNPP +HFD++ PAFLQIAQ +AGIVPIS+RR+PC K GGIR+T+ G+ YFNLV+V+NVGGAGDV  +S+KG+K   W  + RNWGQ WQ++  L G SL+F+V   D R  TS HV+P +WQFG T++
Sbjct:   40 GPWKQAHATFYGGRDGSGTLDGACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKGNKRVKWTPLKRNWGQEWQTSEVLTGESLTFRVMTGDHRKATSWHVLPPDWQFGVTYQ 263          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 264.618 bits (675), Expect = 4.528e-70
Identity = 121/222 (54.50%), Postives = 158/222 (71.17%), Query Frame = 1
Query:  136 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEN--DPKWCLPGSII-VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGPSLSFQVTASDGRTVTSNHVVPANWQFGQTF 792
            GW  G ATFY              YGNLY+ GYGTNTAALS+ LFN+G SCG CY + C+    P+WC  G+ + +TATN CPPN AL +++GGWCNPP  HFDMAEPA+LQI  Y+AGI+P+ ++++ C ++GGIRFT+ G ++F LVLV+NV G+G V SVS+KG  TGW  ++RNWG NWQ NS L G +LSF VT++ G+T+   +VVP+ W FG TF
Sbjct:   26 GWNKGTATFYGGADASGTMGGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAGAAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKGGSTGWITLNRNWGANWQCNSGLVGQALSFAVTSTGGQTLYIYNVVPSWWSFGMTF 247          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 2.935e-69
Identity = 121/235 (51.49%), Postives = 159/235 (67.66%), Query Frame = 1
Query:  112 GTFGDYGG-----GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGPSLSFQVTASDGRTVTSNHVVPANWQF-GQTFEG 798
            G    +GG     GW  G ATFY              YG+L+ QGYG  TAALSTALFNNG  CG+CYE+ CE+ P+WCLPGSI +TATNFCPP+    NDN  WCNPP +HFD+++P FL+IA+Y+AG+VP+ FRR+PCAK GG++F + G+ +F ++L  NVGGAG V ++ IKG++T W AM +NWGQ W +   L G  LSF++T SDG       V P +W+  GQ+F+G
Sbjct:   76 GALPSHGGQVPHSGWGHGRATFYGDINGGETQQGACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFCPPDFTKPNDN--WCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDWKCNGQSFDG 308          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 7.229e-68
Identity = 120/221 (54.30%), Postives = 150/221 (67.87%), Query Frame = 1
Query:  139 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDP--KWCLP-GSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGPSLSFQVTASDGRTVTSNHVVPANWQFGQTF 792
            W    ATFY              YGNLY QGYG   AALSTALFN+G +CG CY + C+ D   +WC P G++ VTATN CPPN AL +D GGWCNPP +HFDM++PA+ +I  YRAGIVP+ +RR+ C ++GG+RFTV G  +F LVLV NV G+G V +VS++G+ TGW  MSRNWG NWQS + L G  LSF VT + G+ +    V PA W+FGQTF
Sbjct:   27 WIPATATFYGGNDGSGTMGGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRGAVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRRVRCWRRGGVRFTVGGFDHFELVLVANVAGSGSVAAVSVRGAGTGWLQMSRNWGANWQSLAGLAGQPLSFGVTTTGGQYILFQDVAPAGWKFGQTF 247          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 6.120e-67
Identity = 121/221 (54.75%), Postives = 149/221 (67.42%), Query Frame = 1
Query:  139 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPGSII-VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGPSLSFQVTASDGRTVTSNHVVPANWQFGQTF 792
            W    ATFY              YGNLY QGYG + AALS ALFN+G SCG CY + C+    P+WC  G+ + VTATN CPPN AL +D GGWCNPP  HFDM++PA+ QI  Y+AGIVP+ ++R+ C ++GG+RFTV G +YF LVL+TNV G+G V S  IKG+ TGW  MSRNWG NWQS + L G +LSF VT + G+ +    V PA WQFGQTF
Sbjct:   28 WSPATATFYGGSDGSGTMGGACGYGNLYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGTAVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNVAGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPAWWQFGQTF 248          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 9.770e-65
Identity = 110/222 (49.55%), Postives = 154/222 (69.37%), Query Frame = 1
Query:  133 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGPSLSFQVTA-SDGRTVTSNHVVPANWQFGQTFE 795
            G W+  HATFY              YGNL++ GYG +TAALST LFN+G  CG C+++ C   P      S +VTATN CPPN    ++ GGWCNPP  HFDMA+PAF+++A +RAGI+P+++RR+PC + GG+RF   G+SY+ L+ V NVGGAGD+ S+++KGS+T W +MS NWG ++Q+ S L G SLSF+VT+ + G T+ + +V PANW  G+T++
Sbjct:   35 GPWRYAHATFYGDETGGETMGGACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKSTVVTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQGNSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYTTGETIYAWNVAPANWSGGKTYK 256          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 6.333e-64
Identity = 120/222 (54.05%), Postives = 145/222 (65.32%), Query Frame = 1
Query:  136 GWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPGSII-VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGPSLSFQVTASDGRTVTSNHVVPANWQFGQTF 792
            GW  G ATFY              YGNLY QGYG N AALST LFNNG SCG CY + C  D  P  C  G+ I VT TNFCPPN  L    GGWCN    HFDM++PA+  I  Y AGIVPI ++++ C + GG+RFT+ G +YF LVLVTN+ G+G + S+S+KGS TGW  MSRNWG NWQ  + L G +LSF VT++ G+T+  + VVPA W FGQTF
Sbjct:   22 GWLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGTAITVTGTNFCPPNYDLPY--GGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQVKCWRSGGVRFTITGLNYFELVLVTNMAGSGSIASMSVKGSSTGWIQMSRNWGANWQCLAGLAGQALSFTVTSTGGQTIVFDSVVPAGWSFGQTF 241          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 7.002e-63
Identity = 112/221 (50.68%), Postives = 145/221 (65.61%), Query Frame = 1
Query:  139 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGPSLSFQVTASDGRTVTSNHVVPANWQFGQTFEG 798
            W+   AT+Y              YG+L   GYG  T  LS  LF  G  CG+C+E++C +D +WC+PG SII+TATNFC PN     D GG CNPP +HF +   AF +IA ++AG +P+ +RRI C K+G +RFTV+G   F  VL+TNV G+GD+ +V IKGS+TGW  M RNWGQNW  N+ L   +LSF+VT+SD  TVTS +V P NW +GQTFEG
Sbjct:   40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEG 260          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 7.002e-63
Identity = 113/221 (51.13%), Postives = 150/221 (67.87%), Query Frame = 1
Query:  139 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGPSLSFQVTASDGRTVTSNHVVPANWQFGQTFEG 798
            W+S  A++Y              +G+L   GYG  T  LSTALF  G +CG CYE+KC +D K+CLPG SI+VTATNFC PN  L  D GG CNPP  HF +   +F +IA ++AG++PI +RR+ C + GG+RF V G S+F  VL++NVGGAGDV SV IKG+++GW +M RNWGQ W  NS   G  LSF++T+SDG+T+T+ +VVP  W FG+T+ G
Sbjct:   33 WRSAKASYYAADPEDAIGGACG-FGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEWDFGKTYTG 252          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.194e-62
Identity = 115/221 (52.04%), Postives = 145/221 (65.61%), Query Frame = 1
Query:  139 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCEND--PKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGPSLSFQVTASDGRTVTSNHVVPANWQFGQTF 792
            W  G ATFY              YGNLY QGYG N AALST LFN+G SCG CY + C+    P WC  G +I VT TN+CPPN  L    GGWCN    HFDM++PA+  I  Y AGI+PI ++++ C + GG+RFT+NG +YF LVLVTN+ G+G + S+S+KGS TGW  M+RNWG NWQ  + L G +LSF VT++ G+T+  +  VPA W FGQTF
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGKAITVTGTNYCPPNYDLPY--GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQVKCWRYGGVRFTINGFNYFELVLVTNMAGSGSIASMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTF 241          
The following BLAST results are available for this feature:
BLAST of DN617471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
EXP32_ORYSJ2.654e-7054.02Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ORYSJ4.528e-7054.50Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ARATH2.935e-6951.49Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP27_ORYSJ7.229e-6854.30Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP31_ORYSJ6.120e-6754.75Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA7_ARATH9.770e-6549.55Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP18_ORYSJ6.333e-6454.05Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH7.002e-6350.68Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP10_ORYSJ7.002e-6351.13Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP19_ORYSJ1.194e-6252.04Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617471 ID=DN617471; Name=DN617471; organism=Citrus sinensis; type=EST; length=803bp
CTTAACAAAAAAACACATAAACATAAGCAGCCAGCAGTAGCAGCCATGGC
CAATATTGCAGCATCATCTAGCGTTGCTCTCCTTTTGTTTGTGCTCAATT
TTTGCTTTCGTGGCACATTTGGAGACTATGGTGGTGGGTGGCAAAGTGGC
CATGCAACTTTCTATGGCGGGGGTGATGCTTCCGGCACAATGGGTGGTGC
TTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGGGACTAACACTGCAG
CACTTAGTACCGCTCTATTCAACAATGGCCTAAGCTGTGGTTCATGCTAT
GAAATGAAATGTGAAAATGACCCCAAGTGGTGCCTCCCCGGCTCCATCAT
TGTCACCGCCACCAACTTCTGCCCACCTAACCTTGCCCTGTCTAACGACA
ACGGCGGTTGGTGCAATCCTCCCCTCCAGCACTTTGACATGGCTGAGCCC
GCTTTCTTGCAAATTGCCCAATACCGCGCCGGCATCGTCCCAATTTCCTT
CAGAAGGATCCCGTGTGCGAAGAAAGGAGGAATAAGGTTTACCGTCAATG
GACACTCATACTTCAACCTGGTTTTGGTCACAAATGTCGGAGGAGCAGGA
GATGTACATTCAGTATCAATCAAGGGTTCAAAGACTGGATGGCAAGCAAT
GTCAAGGAACTGGGGCCAAAATTGGCAGAGCAATTCTTATCTTAACGGCC
CAAGTCTTTCTTTCCAAGTGACAGCCAGTGACGGCAGGACTGTGACTAGC
AACCATGTTGTGCCTGCAAATTGGCAATTTGGGCAAACCTTTGAGGGTGG
TCA
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