DN617471

Overview
NameDN617471
Unique NameDN617471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12590 contig Csv1_Contig12590:36..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.320e-61
Identity = 109/225 (48.44%), Postives = 152/225 (67.56%), Query Frame = 1
Query:  130 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGPSLSFQVTASDGR-TVTSNHVVPANWQFGQTFE 795
            G  W++  ATFY              YGN+Y  GYG  T ALSTALFN G +CG C+++KC + P  C  GS   +VTATN CPPN   +++NGGWCNPP  HFD+ +PAF++IA ++AGI+P+S+RR+ C K GGIRF   G+ Y+ LV V NVGG GD+ ++++KGS+TGW  MS NWG ++Q+ S L G SLSF++T+   R T+ + +  PA+W  G+T++
Sbjct:   28 GTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTYQ 251          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.018e-61
Identity = 116/236 (49.15%), Postives = 150/236 (63.56%), Query Frame = 1
Query:  103 CFRGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGPSLSFQVTASDGRTVTSNHVVPANWQFGQTFEG 798
            C R   G Y   W+ G AT+                 YG+L    YG  TA +S ALF  G +CG CYE++C N   WCL GS  ++VTAT+FC PNL LS+D GGWCN P +HF+M+E AFL++A+ +A IVP+ FRR+ C + GG+RFT+ G + F  VL+TNV   G+V +V +KGS+TGW  M RNWGQNWQ ++ L G  LSF+VT   GRTV +  V P +W F QTFEG
Sbjct:   21 CIRLGNGGYEE-WRMGSATYIKESLGHPLNDGGGACGYGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDWMFAQTFEG 255          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 8.559e-61
Identity = 113/229 (49.34%), Postives = 150/229 (65.50%), Query Frame = 1
Query:  121 GDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE--NDPKWCLPGSII-VTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQY-RAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGPSLSFQVTASDGRTVTSNHVVPANWQFGQTF 792
            G    GW   HAT+Y              Y N Y  G+G +TAALS  LF +G SCG CY+++C+   DPKWCL G+ + VTATNFCP     +N+N GWCN P  HFDM+ PAF +IA+    GIVP+ +RR+ C ++GG+RFT+ G   FN+V+++NVGG G V SV+++GSK   W  M+RNWG NWQS+  L G  LSF+VT +D +T T  +VVP++W FGQTF
Sbjct:   21 GMCSNGWIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNFCP-----TNNNNGWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTF 244          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.046e-58
Identity = 111/225 (49.33%), Postives = 148/225 (65.78%), Query Frame = 1
Query:  139 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGG--WCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIK-GSKTGWQAMSRNWGQNWQSNSYLNGPSLSFQVTA-SDGRTVTSNHVVPANWQFGQTFE 795
            W   HATFY              YGNLY+ GYGT+TAALST LF +G  CG+CY+M+C      C  GS  I VTATN CPPN A   D GG  WCNPP  HFD+++PAF+++A +RAGIVP+ +RR+PCA+ GG+RF + G+ Y+ L  V NV GAGDV  + +K G   GW  MS NWG ++Q+ + L G +LSF+VT+ + G+T+ +  V PA+W FG T++
Sbjct:   37 WTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASWCFGLTYQ 260          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 226.483 bits (576), Expect = 1.366e-58
Identity = 107/197 (54.31%), Postives = 137/197 (69.54%), Query Frame = 1
Query:  208 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGPSLSFQVTASDGRTVTSNHVVPANWQFGQTFEG 798
            YG+L   GYG  TAALSTALFN+G SCG+CYE+ C  +P+ CL GSI +TAT+ CPP  A       WC  P +HFD++ P F++IAQ +A +VP+ +RR+PCAK GG++F V G+     +L  NVGGAGD+ +VS KGSKT W  MSR WGQNW +N  L G S+S +VT SDG T     V+PA+W FGQTF+G
Sbjct:   69 YGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPGSA-------WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASWGFGQTFDG 258          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.860e-56
Identity = 108/221 (48.87%), Postives = 138/221 (62.44%), Query Frame = 1
Query:  139 WQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCE--NDPKWCLPG-SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGPSLSFQVTASDGRTVTSNHVVPANWQFGQTF 792
            W  G ATFY              YGNLY Q YG N AALST LFN+G SCG CY + C+    P WC  G +I VT TN+           GGWCN    +FDM++PA+  I  Y AGIVPI ++++ C + GG+RF +NG +YF LVLVTN+ G+G + S+S+KGS TGW  M+RNWG NWQ  + L G +LSF VT++ G+T+  +  VPA W FGQTF
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY-----------GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTF 232          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.860e-56
Identity = 98/199 (49.25%), Postives = 137/199 (68.84%), Query Frame = 1
Query:  208 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGPSLSFQVTASDGRTVTSNHVVPANWQFGQTFEG 798
            YG+L    +   +A LS  LFN G SCG+C E++C N  +WCL GS  ++VTAT+FCPPN  LS+D GGWCN P +H +++  AF  IA+ RA ++PI +RR+ C ++GG+RF+++G S+F  VL++NVG  G+V  V +KG  T W  M+RNWGQNW S+  L G SLSF+VT   G+T+ S  V P  W+FG T++G
Sbjct:   53 YGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYWRFGMTYQG 251          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 6.362e-48
Identity = 100/229 (43.67%), Postives = 135/229 (58.95%), Query Frame = 1
Query:  139 WQSGHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSKTG--WQAMSRNWGQNWQSNSYL-NGPSLSFQVT--ASDGRTVTSNHVVPANWQFGQTFEG 798
            W  G ATFY                  N     Y T TAALST LF +G  CG CYE++C   P WC PGS  +++T TN CPPN  L ND+GGWCNPP  HFDMA P+FL++AQ  AGIVP+ +RR+PC + GG+RF + G+ Y+ L+ V NVGGAGDV S+S+K S  G  W   + NWG  +Q  + L N   L+ ++T  ++  +T+  +  +   W  G  ++G
Sbjct:   52 WHDGSATFYGDPSGMGDDFGGACGYVSNDIVSLYSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYSTPQQTIIVSDAISPWWITGLCYQG 279          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.574e-44
Identity = 90/222 (40.54%), Postives = 134/222 (60.36%), Query Frame = 1
Query:  133 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNGHSYFNLVLVTNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGPSLSFQVTASDGRTVTSNHVVPANWQFGQTFE 795
            G W  GHATFY               G   + GYG  TAA+S ALF+NG  CG+CYE+K ++        +++VTATN  PP +   N   G      +HFD+  PAFL IA+ + G+VP+S+R++ C ++GGI++T+ G+  +N+V+V NVGGAGDV  +++KG+K   W  + R+WGQ W++ + L G SL+F+V   D R  TS  V P +W +  T++
Sbjct:   80 GPWVDGHATFYGGRDASGTTEGGAC-GYKDADGYGAMTAAVSPALFDNGAGCGACYELKGDSGK------TVVVTATNQAPPPV---NGMKG------EHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTYQ 285          
BLAST of DN617471 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.740e-27
Identity = 75/236 (31.78%), Postives = 115/236 (48.73%), Query Frame = 1
Query:  130 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQ-------YRAGIVPISFRRIPCAKKGGIRFTVNGHS--YFNLVLVTNVGGAGDVHSVSIKGSK--TGWQAMSRNWGQNWQSNSYLN---GPSLSFQVTASDGRTVTSNHVVPANWQFGQTF 792
            G GW SG AT+Y              Y +   Q  + +  AA   +LF NG  CGSCY++KC  + + C    + V  T+ CP         GG C     HFDM+  AF  +A          AG++ I ++R+PC     + F V+  S  Y+  +LV    G GD+ +V I  ++   GW+AM ++WG  W+ NS       P  S ++T+  G+ + +N+V+P+ WQ G T+
Sbjct:   42 GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACSGRPVTVVITDSCP---------GGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSNTGKPLSPPFSIRLTSGSGKVLVANNVIPSGWQAGLTY 267          
The following BLAST results are available for this feature:
BLAST of DN617471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
EXP18_ARATH1.320e-6148.44Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP16_ORYSJ5.018e-6149.15Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH8.559e-6149.34Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP30_ORYSJ1.046e-5849.33Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP21_ARATH1.366e-5854.31Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP20_ORYSJ4.860e-5648.87Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH4.860e-5649.25Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP17_ORYSJ6.362e-4843.67Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ5.574e-4440.54Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB5_ORYSJ4.740e-2731.78Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01E01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617471 ID=DN617471; Name=DN617471; organism=Citrus sinensis; type=EST; length=803bp
CTTAACAAAAAAACACATAAACATAAGCAGCCAGCAGTAGCAGCCATGGC
CAATATTGCAGCATCATCTAGCGTTGCTCTCCTTTTGTTTGTGCTCAATT
TTTGCTTTCGTGGCACATTTGGAGACTATGGTGGTGGGTGGCAAAGTGGC
CATGCAACTTTCTATGGCGGGGGTGATGCTTCCGGCACAATGGGTGGTGC
TTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGGGACTAACACTGCAG
CACTTAGTACCGCTCTATTCAACAATGGCCTAAGCTGTGGTTCATGCTAT
GAAATGAAATGTGAAAATGACCCCAAGTGGTGCCTCCCCGGCTCCATCAT
TGTCACCGCCACCAACTTCTGCCCACCTAACCTTGCCCTGTCTAACGACA
ACGGCGGTTGGTGCAATCCTCCCCTCCAGCACTTTGACATGGCTGAGCCC
GCTTTCTTGCAAATTGCCCAATACCGCGCCGGCATCGTCCCAATTTCCTT
CAGAAGGATCCCGTGTGCGAAGAAAGGAGGAATAAGGTTTACCGTCAATG
GACACTCATACTTCAACCTGGTTTTGGTCACAAATGTCGGAGGAGCAGGA
GATGTACATTCAGTATCAATCAAGGGTTCAAAGACTGGATGGCAAGCAAT
GTCAAGGAACTGGGGCCAAAATTGGCAGAGCAATTCTTATCTTAACGGCC
CAAGTCTTTCTTTCCAAGTGACAGCCAGTGACGGCAGGACTGTGACTAGC
AACCATGTTGTGCCTGCAAATTGGCAATTTGGGCAAACCTTTGAGGGTGG
TCA
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